1yis

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:31, 9 October 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 3: Line 3:
<StructureSection load='1yis' size='340' side='right'caption='[[1yis]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='1yis' size='340' side='right'caption='[[1yis]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1yis]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Caeel Caeel]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YIS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YIS FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1yis]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YIS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YIS FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1c3c|1c3c]], [[1c3u|1c3u]], [[1dof|1dof]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yis OCA], [https://pdbe.org/1yis PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yis RCSB], [https://www.ebi.ac.uk/pdbsum/1yis PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yis ProSAT], [https://www.topsan.org/Proteins/SECSG/1yis TOPSAN]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenylosuccinate_lyase Adenylosuccinate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.2.2 4.3.2.2] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yis OCA], [http://pdbe.org/1yis PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yis RCSB], [http://www.ebi.ac.uk/pdbsum/1yis PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yis ProSAT], [http://www.topsan.org/Proteins/SECSG/1yis TOPSAN]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PUR8_CAEEL PUR8_CAEEL]] Catalyzes two non-sequential steps in de novo AMP synthesis: converts (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate (SAICAR) to fumarate plus 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide, and thereby also contributes to de novo IMP synthesis, and converts succinyladenosine monophosphate (SAMP) to AMP and fumarate.
+
[https://www.uniprot.org/uniprot/PUR8_CAEEL PUR8_CAEEL] Catalyzes two non-sequential steps in de novo AMP synthesis: converts (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate (SAICAR) to fumarate plus 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide, and thereby also contributes to de novo IMP synthesis, and converts succinyladenosine monophosphate (SAMP) to AMP and fumarate.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 17: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yi/1yis_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yi/1yis_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 27: Line 25:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Adenylosuccinate lyase]]
+
[[Category: Caenorhabditis elegans]]
-
[[Category: Caeel]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: An, J]]
+
[[Category: An J]]
-
[[Category: Arabshahi, A]]
+
[[Category: Arabshahi A]]
-
[[Category: Bray, T]]
+
[[Category: Bray T]]
-
[[Category: Cao, Z]]
+
[[Category: Cao Z]]
-
[[Category: Chen, Y J]]
+
[[Category: Chen Y-J]]
-
[[Category: Delucas, L]]
+
[[Category: Delucas L]]
-
[[Category: Gray, R]]
+
[[Category: Gray R]]
-
[[Category: Huang, W]]
+
[[Category: Huang W]]
-
[[Category: Johnson, D]]
+
[[Category: Johnson D]]
-
[[Category: Karpova, E]]
+
[[Category: Karpova E]]
-
[[Category: Li, S]]
+
[[Category: Li S]]
-
[[Category: Lu, S]]
+
[[Category: Lu S]]
-
[[Category: Luan, C H]]
+
[[Category: Luan C-H]]
-
[[Category: Luo, D]]
+
[[Category: Luo D]]
-
[[Category: Luo, M]]
+
[[Category: Luo M]]
-
[[Category: McKinstry, A]]
+
[[Category: McKinstry A]]
-
[[Category: Qiu, S]]
+
[[Category: Qiu S]]
-
[[Category: Structural genomic]]
+
[[Category: Schormann N]]
-
[[Category: Schormann, N]]
+
[[Category: Shang Q]]
-
[[Category: Shang, Q]]
+
[[Category: Symersky J]]
-
[[Category: Symersky, J]]
+
[[Category: Tsao J]]
-
[[Category: Tsao, J]]
+
[[Category: Zhang Y]]
-
[[Category: Zhang, Y]]
+
[[Category: Zhou J]]
-
[[Category: Zhou, J]]
+
-
[[Category: Caenorhabditis]]
+
-
[[Category: Lyase]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Secsg]]
+
-
[[Category: X-ray structure]]
+

Current revision

Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase

PDB ID 1yis

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1yis"
Personal tools