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| <StructureSection load='4d48' size='340' side='right'caption='[[4d48]], [[Resolution|resolution]] 2.46Å' scene=''> | | <StructureSection load='4d48' size='340' side='right'caption='[[4d48]], [[Resolution|resolution]] 2.46Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4d48]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Erwac Erwac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D48 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4D48 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4d48]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Erwinia_amylovora_CFBP1430 Erwinia amylovora CFBP1430]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D48 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4D48 FirstGlance]. <br> |
- | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4d47|4d47]]</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.46Å</td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/UTP--glucose-1-phosphate_uridylyltransferase UTP--glucose-1-phosphate uridylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.9 2.7.7.9] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4d48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d48 OCA], [https://pdbe.org/4d48 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4d48 RCSB], [https://www.ebi.ac.uk/pdbsum/4d48 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4d48 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4d48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d48 OCA], [http://pdbe.org/4d48 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4d48 RCSB], [http://www.ebi.ac.uk/pdbsum/4d48 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4d48 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/D4I3X5_ERWAC D4I3X5_ERWAC] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Erwac]] | + | [[Category: Erwinia amylovora CFBP1430]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: UTP--glucose-1-phosphate uridylyltransferase]]
| + | [[Category: Benini S]] |
- | [[Category: Benini, S]] | + | [[Category: Cianci M]] |
- | [[Category: Cianci, M]] | + | [[Category: Toccafondi M]] |
- | [[Category: Toccafondi, M]] | + | [[Category: Wuerges J]] |
- | [[Category: Wuerges, J]] | + | |
- | [[Category: Amylovoran biosynthesis]]
| + | |
- | [[Category: Fire blight]]
| + | |
- | [[Category: Transferase]]
| + | |
- | [[Category: Udp-glucose]]
| + | |
| Structural highlights
Function
D4I3X5_ERWAC
Publication Abstract from PubMed
Erwinia amylovora, a Gram-negative plant pathogen, is the causal agent of Fire Blight, a contagious necrotic disease affecting plants belonging to the Rosaceae family, including apple and pear. E. amylovora is highly virulent and capable of rapid dissemination in orchards; effective control methods are still lacking. One of its most important pathogenicity factors is the exopolysaccharide amylovoran. Amylovoran is a branched polymer made by the repetition of units mainly composed of galactose, with some residues of glucose, glucuronic acid and pyruvate. E. amylovora glucose-1-phosphate uridylyltransferase (UDP-glucose pyrophosphorylase, EC 2.7.7.9) has a key role in amylovoran biosynthesis. This enzyme catalyses the production of UDP-glucose from glucose-1-phosphate and UTP, which the epimerase GalE converts into UDP-galactose, the main building block of amylovoran. We determined EaGalU kinetic parameters and substrate specificity with a range of sugar 1-phosphates. At time point 120min the enzyme catalysed conversion of the sugar 1-phosphate into the corresponding UDP-sugar reached 74% for N-acetyl-alpha-d-glucosamine 1-phosphate, 28% for alpha-d-galactose 1-phosphate, 0% for alpha-d-galactosamine 1-phosphate, 100% for alpha-d-xylose 1-phosphate, 100% for alpha-d-glucosamine 1-phosphate, 70% for alpha-d-mannose 1-phosphate, and 0% for alpha-d-galacturonic acid 1-phosphate. To explain our results we obtained the crystal structure of EaGalU and augmented our study by docking the different sugar 1-phosphates into EaGalU active site, providing both reliable models for substrate binding and enzyme specificity, and a rationale that explains the different activity of EaGalU on the sugar 1-phosphates used. These data demonstrate EaGalU potential as a biocatalyst for biotechnological purposes, as an alternative to the enzyme from Escherichia coli, besides playing an important role in E. amylovora pathogenicity.
Glucose-1-phosphate uridylyltransferase from Erwinia amylovora: Activity, structure and substrate specificity.,Benini S, Toccafondi M, Rejzek M, Musiani F, Wagstaff BA, Wuerges J, Cianci M, Field RA Biochim Biophys Acta. 2017 Nov;1865(11 Pt A):1348-1357. doi:, 10.1016/j.bbapap.2017.08.015. Epub 2017 Aug 24. PMID:28844747[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Benini S, Toccafondi M, Rejzek M, Musiani F, Wagstaff BA, Wuerges J, Cianci M, Field RA. Glucose-1-phosphate uridylyltransferase from Erwinia amylovora: Activity, structure and substrate specificity. Biochim Biophys Acta. 2017 Nov;1865(11 Pt A):1348-1357. doi:, 10.1016/j.bbapap.2017.08.015. Epub 2017 Aug 24. PMID:28844747 doi:http://dx.doi.org/10.1016/j.bbapap.2017.08.015
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