This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


User:Jaime Prilusky/Links

From Proteopedia

< User:Jaime Prilusky(Difference between revisions)
Jump to: navigation, search
Current revision (04:37, 21 August 2023) (edit) (undo)
 
(76 intermediate revisions not shown.)
Line 1: Line 1:
-
<!-- Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} -->
+
{{#tree:id=PDBTree|openlevels=0|close=top|open=top|
-
 
+
-
{{#tree:id=PDBTree| openlevels=0|
+
** Pages
** Pages
 +
***[[Book:Structural_Proteomics_and_its_Impact_on_the_Life_Sciences:6|Book:6]]
 +
***[[User:Jaime_Prilusky/Sentences]]
***[[User:Jaime_Prilusky/Test/3jb9]] Cryo-EM structure of the yeast spliceosome
***[[User:Jaime_Prilusky/Test/3jb9]] Cryo-EM structure of the yeast spliceosome
***[[User:Jaime_Prilusky/Test/5ire]] Cryo-EM structure of Zika Virus
***[[User:Jaime_Prilusky/Test/5ire]] Cryo-EM structure of Zika Virus
Line 9: Line 9:
***[[User:Jaime_Prilusky/Test/4v99]] Panicum Mosaic Virus
***[[User:Jaime_Prilusky/Test/4v99]] Panicum Mosaic Virus
***[[User:Jaime_Prilusky/Test/3wu2]] Photosystem II complex (21 Ligands)
***[[User:Jaime_Prilusky/Test/3wu2]] Photosystem II complex (21 Ligands)
 +
***[[5ijc]]
 +
***[[1ijg]]
 +
***[[6w01]] [[3j3q]] large structures
 +
***[[6vxs]] [[6w02]] Ligands
 +
***[[1ece]] evolutionary conservation
 +
***[[User:Karsten_Theis/wobble|wobble]]
 +
***[http://proteopedia.org/extensions/jsmol/spt/ext/rcsb/gotoLigand.spt gotoLigand]
 +
*** [[SN1_reaction]] Substitution of Cl- and tert-Butanol
 +
*** [[SN2_reaction]] Substitution of chloride and methanol
 +
*** [[Ozonolysis]] from [https://www.chemtube3d.com/ ChemTube3D]
 +
*** [[:Category:BioMolViz]]
 +
 +
** Hosts
 +
*** [https://fold.proteopedia.org FoldIndex]
 +
*** [https://dipole.proteopedia.org Dipole Moments Server]
** Tests
** Tests
 +
*** [[User:Jaime_Prilusky/Test/transition]] options: zoom, reload model
 +
*** [[User:Jaime_Prilusky/Test/alphaFold]] reference scale under applet
 +
*** [[User:Jaime_Prilusky/Test/demoSeqtool]]
 +
*** [[User:Jaime_Prilusky/Test/saveScene]] also mixing scenes from other pages by page id
 +
*** [[User:Jaime_Prilusky/Test/buttons]]
*** [[User:Jaime_Prilusky/Test/Beta-Prime_Subunit_of_Bacterial_RNA_Polymerase]]
*** [[User:Jaime_Prilusky/Test/Beta-Prime_Subunit_of_Bacterial_RNA_Polymerase]]
*** [[User:Jaime_Prilusky/Test/Alpha_Subunit_of_Thermus_aquaticus_DNA_Polymerase_III]]
*** [[User:Jaime_Prilusky/Test/Alpha_Subunit_of_Thermus_aquaticus_DNA_Polymerase_III]]
*** [[User:Jaime_Prilusky/Test/references]]
*** [[User:Jaime_Prilusky/Test/references]]
*** [http://size43.com/jqueryVideoTool.html Aspect Ratio Calculator]
*** [http://size43.com/jqueryVideoTool.html Aspect Ratio Calculator]
 +
***[[User:Jaime.Prilusky/Test/Mixing]]
 +
***[[User:Jaime.Prilusky/Test/PNGJ]]
 +
***[[User:Jaime.Prilusky/Test/Surfaces]]
 +
***[[User:Jaime.Prilusky/Test/loading]]
***[[User:Jaime.Prilusky/Test/tree]]
***[[User:Jaime.Prilusky/Test/tree]]
 +
***[[User:Jaime.Prilusky/Test/morph]]
 +
***[[User:Jaime.Prilusky/Test/Smiles]]
***[[User:Jaime.Prilusky/Test/assemblies]]
***[[User:Jaime.Prilusky/Test/assemblies]]
 +
***[[User:Jaime.Prilusky/Test/html5media html5media]]
 +
***[[User:Jaime.Prilusky/Test/applet_no_structure|Self-hiding applet]]
***[[User:Jaime.Prilusky/Test/green link]]
***[[User:Jaime.Prilusky/Test/green link]]
***[[User:Jaime.Prilusky/Test/Alcala]]
***[[User:Jaime.Prilusky/Test/Alcala]]
Line 22: Line 50:
***[[User:Jaime.Prilusky/Test/Sortable]]
***[[User:Jaime.Prilusky/Test/Sortable]]
***[[User:Jaime_Prilusky/Test/MSOE]]
***[[User:Jaime_Prilusky/Test/MSOE]]
 +
***[[User:Jaime.Prilusky/Test/related|related]]
 +
***[[User:Jaime.Prilusky/Test/collapse|collapse]]
 +
 +
***[[User:Jaime.Prilusky/Test/1ece_jmol|1ece JSmol]]
 +
***[[User:Jaime.Prilusky/Test/1ece_molstar|1ece Mol*]]
 +
 +
***[[User:Jaime.Prilusky/Test/2a3i_jmol|2a3i JSmol]]
 +
***[[User:Jaime.Prilusky/Test/2a3i_molstar|2a3i Mol*]]
 +
 +
 +
** Mol*
 +
*** [https://webchemdev.ncbr.muni.cz/misc/proteopedia-wrapper Wrapper]
 +
***[[User:Jaime_Prilusky/Test/TestSAT Molstar 1]]
 +
***[[User:Jaime_Prilusky/Test/SAT Molstar]] [http://proteopedia.org/cgi-bin/SATMolstar?id=839292 SATMol*]
***[[User:Jaime_Prilusky/Test/Viewer]]
***[[User:Jaime_Prilusky/Test/Viewer]]
***[[User:Jaime_Prilusky/Test/MolStar_MultiModel]]
***[[User:Jaime_Prilusky/Test/MolStar_MultiModel]]
***[[User:Jaime_Prilusky/Test/MolStar_morph]]
***[[User:Jaime_Prilusky/Test/MolStar_morph]]
-
***[[User:Jaime_Prilusky/Test/3usb]]
+
***[[User:Jaime_Prilusky/Test/1sva]] SIMIAN VIRUS 40
 +
***[[User:Jaime_Prilusky/Test/3usb]] 4 Residues
***[[User:Jaime_Prilusky/Test/3rec]]
***[[User:Jaime_Prilusky/Test/3rec]]
***[[User:Jaime_Prilusky/Test/5jpq]]
***[[User:Jaime_Prilusky/Test/5jpq]]
Line 32: Line 75:
***[[User:Jaime_Prilusky/Test/3wu2]] Photosystem II complex
***[[User:Jaime_Prilusky/Test/3wu2]] Photosystem II complex
***[[User:Jaime_Prilusky/Test/3jb9]] Cryo-EM structure of the yeast spliceosome
***[[User:Jaime_Prilusky/Test/3jb9]] Cryo-EM structure of the yeast spliceosome
 +
***[[User:Jaime_Prilusky/Test/4v60]] The structure of rat liver vault at 3.5 angstrom resolution
***[[User:Jaime_Prilusky/Test/4v99]] Panicum Mosaic Virus
***[[User:Jaime_Prilusky/Test/4v99]] Panicum Mosaic Virus
***[[User:Jaime_Prilusky/Test/4enl]] Consurf
***[[User:Jaime_Prilusky/Test/4enl]] Consurf
Line 38: Line 82:
** Samples
** Samples
 +
*** [[Journal:JBIC:2|I3DC demo]] JBIC:Structure of Anticancer Ruthenium Half-Sandwich Complex Bound to Glycogen Synthase Kinase 3ß
*** [[User:Jaime_Prilusky/SAT demo/]]
*** [[User:Jaime_Prilusky/SAT demo/]]
*** [[User:Jaime_Prilusky/Images]]
*** [[User:Jaime_Prilusky/Images]]
*** [[User:Jaime_Prilusky/Evolutionary Trace]]
*** [[User:Jaime_Prilusky/Evolutionary Trace]]
- 
*** [https://molstar.org/viewer/?hide-controls=1&snapshot-id=capsing-capsids capsing-capsids]
*** [https://molstar.org/viewer/?hide-controls=1&snapshot-id=capsing-capsids capsing-capsids]
*** [https://molstar.org/viewer/?hide-controls=1&snapshot-id=retinal-isomeration retinal-isomeration]
*** [https://molstar.org/viewer/?hide-controls=1&snapshot-id=retinal-isomeration retinal-isomeration]
Line 52: Line 96:
** Guides
** Guides
*** [[User:Jaime_Prilusky/Guide/Structure Function Med]]
*** [[User:Jaime_Prilusky/Guide/Structure Function Med]]
-
}}
+
*** [[Proteopedia:Users_Modes_Areas]] Who's using, Page's domain, Special Groups
-
[[User:Jaime_Prilusky/Workbench/Proteopedia on Education]]
+
** Extensions
 +
*** [[User:Jaime_Prilusky/JSmolExtension|JSmol]]
 +
*** [[User:Jaime_Prilusky/MolStarExtension|Mol*]]
 +
*** [http://proteopedia.org/support/JSmolExtension/ support/JSmolExtension]
 +
***[[User:Jaime_Prilusky/Test/JSmolExtensionExamples]]
-
[[5ijc]] [[1ijg]]
+
** Workbench
 +
*** [[User:Jaime_Prilusky/Workbench/Proteopedia development|Development]]
 +
*** [[User:Jaime_Prilusky/Workbench/Proteopedia on Education|Paper on Education]]
 +
*** [[User:Jaime_Prilusky/Workbench/Test|Test]]
-
[[User:Jaime_Prilusky/Template]]
+
** To Review - possibly delete
 +
*** [[User:Jaime_Prilusky/Workbench/POTY2010|POTY2010]]
 +
}}
-
[[1ece]] evolutionary conservation
+
* [https://fontawesome.com/icons?d=gallery&m=free FontAwesome]
 +
* [[Mutation:BRCA1]][[Mutation:BRCA1_DATA]]
 +
* [[User:Eric_Martz/Workbench/AccountManagement#Boilerplate|Boilerplate]] with text to Confirm accounts
 +
* [[Proteopedia:Development|Proteopedia development chronology]]
 +
* [[User:Jaime_Prilusky/Template]]
 +
* [http://proteopedia.org/cgi-bin/print3d print3d]
 +
* [http://proteopedia.org/cgi-bin/print3d/list print3d list]
 +
* [[Interesting Structures]]
 +
* [[User:Jaime_Prilusky/2exp1]]
 +
* [[User:Jaime_Prilusky/4EMY]]
 +
* [[User:Jaime_Prilusky/4EMYclean]]
 +
* [[User:Jaime_Prilusky/Applet_Sync]]
 +
* [[User:Jaime_Prilusky/ChiLe]]
 +
* [[User:Jaime_Prilusky/Editors]]
 +
* [[User:Jaime_Prilusky/How_do_we_get_the_oxygen_we_breathe]]
 +
* [[User:Jaime_Prilusky/Motif]]
 +
* [[User:Jaime_Prilusky/MultiApplets]]
 +
* [[User:Jaime_Prilusky/paltformSpeed]]
 +
* [[User:Jaime_Prilusky/People]]
 +
* [[User:Jaime_Prilusky/PNGJ]]
 +
* [[User:Jaime_Prilusky/Sandbox_Biological_Unit]]
 +
* [[User:Jaime_Prilusky/Sandbox_molshow]]
 +
* [[User:Jaime_Prilusky/Sandbox_One_Applet]]
 +
* [[User:Jaime_Prilusky/Sandbox_Quiz]]
 +
* [[User:Jaime_Prilusky/Sandbox_slideshow]]
 +
* [[User:Jaime_Prilusky/Sandbox_Small_Molecules]]
 +
* [[User:Jaime_Prilusky/Sandbox_Surfaces]]
 +
* [[User:Jaime_Prilusky/Sandbox_x]]
 +
* [[User:Jaime_Prilusky/Sandbox_y]]
 +
* [[User:Jaime_Prilusky/Scrolling seeded]]
 +
* [[User:Jaime_Prilusky/scrolling]]
 +
* [[User:Jaime_Prilusky/Seeded_JSmol]]
 +
* [[User:Jaime_Prilusky/Test (Hebrew)]]
 +
* [[User:Jaime_Prilusky/Workbench/GSpub]]
 +
* [http://proteopedia.org/cgi-bin/send2MolecularPlayground send2MolecularPlayground] nopng size deb
-
[[User:Jaime_Prilusky/Workbench/Test]]
+
<!-- Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} -->
-
 
+
-
[[User:Jaime_Prilusky/JSmolExtension]]
+
-
 
+
-
[[User:Jaime_Prilusky/LiteMolExtension]]
+
-
 
+
-
[[User:Jaime_Prilusky/MolStarExtension]]
+
-
 
+
-
[http://proteopedia.org/support/JSmolExtension/ support/JSmolExtension]
+
-
 
+
-
[http://proteopedia.org/cgi-bin/send2MolecularPlayground send2MolecularPlayground] nopng size deb
+
-
 
+
-
[[User:Jaime_Prilusky/Applet_Sync]]
+
-
 
+
-
[[User:Jaime_Prilusky/paltformSpeed]]
+
-
 
+
-
[[User:Jaime_Prilusky/MultiApplets]]
+
-
 
+
-
[[User:Jaime_Prilusky/Editors]]
+
-
 
+
-
[[User:Jaime_Prilusky/Test (Hebrew)]]
+
-
 
+
-
[[User:Jaime_Prilusky/2exp1]]
+
-
 
+
-
[[User:Jaime_Prilusky/ChiLe]]
+
-
 
+
-
[[User:Jaime_Prilusky/4EMY]]
+
-
 
+
-
[[User:Jaime_Prilusky/scrolling]]
+
-
 
+
-
[[User:Jaime_Prilusky/4EMYclean]]
+
-
 
+
-
[[User:Jaime_Prilusky/JSmol Tests|JSmol PDB size Tests]]
+
-
 
+
-
[[User:Jaime_Prilusky/Inline|Inline]]
+
-
 
+
-
[[User:Jaime_Prilusky/JSmol_mixed|JSmol mixed]]
+
-
 
+
-
[[User:Jaime_Prilusky/Seeded_JSmol]]
+
-
 
+
-
[[User:Jaime_Prilusky/PNGJ]]
+
-
 
+
-
[[User:Jaime_Prilusky/Motif]]
+
-
 
+
-
[[User:Jaime_Prilusky/Scrolling seeded]]
+
-
 
+
-
[[User:Jaime_Prilusky/Scene under number]]
+
-
 
+
-
[[User:Jaime_Prilusky/Sandbox_Biological_Unit]]
+
-
 
+
-
[[User:Jaime_Prilusky/How_do_we_get_the_oxygen_we_breathe]]
+
-
 
+
-
[[User:Jaime_Prilusky/Sandbox_Small_Molecules]]
+
-
 
+
-
[[User:Jaime_Prilusky/Sandbox_Surfaces]]
+
-
 
+
-
[[User:Jaime_Prilusky/Sandbox_One_Applet]]
+
-
 
+
-
[[User:Jaime_Prilusky/Sandbox_slideshow]]
+
-
 
+
-
[[User:Jaime_Prilusky/Sandbox_molshow]]
+
-
 
+
-
[[User:Jaime_Prilusky/Sandbox_x]]
+
-
 
+
-
[[User:Jaime_Prilusky/Sandbox_y]]
+
-
 
+
-
[[User:Jaime_Prilusky/Sandbox_Quiz]]
+
-
 
+
-
[[User:Jaime_Prilusky/Workbench/GSpub]]
+
-
 
+
-
[[User:Jaime_Prilusky/Workbench/Main]]
+
-
 
+
-
[[User:Jaime_Prilusky/Scene on Structure Block]]
+
-
 
+
-
[[User:Jaime_Prilusky/People]]
+
-
 
+
-
x
+

Current revision

  close all  open all 




Proteopedia Page Contributors and Editors (what is this?)

Jaime Prilusky

Retrieved from "http://52.214.119.220/wiki/index.php/User:Jaime_Prilusky/Links"
Personal tools