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| ==Solution structure of big defensin== | | ==Solution structure of big defensin== |
- | <StructureSection load='2rng' size='340' side='right'caption='[[2rng]], [[NMR_Ensembles_of_Models | 25 NMR models]]' scene=''> | + | <StructureSection load='2rng' size='340' side='right'caption='[[2rng]]' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2rng]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Tachypleus_tridentatus Tachypleus tridentatus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RNG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RNG FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2rng]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Tachypleus_tridentatus Tachypleus tridentatus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RNG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RNG FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rng FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rng OCA], [http://pdbe.org/2rng PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2rng RCSB], [http://www.ebi.ac.uk/pdbsum/2rng PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2rng ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 25 models</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rng FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rng OCA], [https://pdbe.org/2rng PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rng RCSB], [https://www.ebi.ac.uk/pdbsum/2rng PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rng ProSAT]</span></td></tr> |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/BDEF_TACTR BDEF_TACTR]] Significantly inhibits the growth of Gram-negative and Gram-positive bacteria and fungi in vitro.<ref>PMID:8586631</ref> | + | [https://www.uniprot.org/uniprot/BDEF_TACTR BDEF_TACTR] Significantly inhibits the growth of Gram-negative and Gram-positive bacteria and fungi in vitro.<ref>PMID:8586631</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| [[Category: Large Structures]] | | [[Category: Large Structures]] |
| [[Category: Tachypleus tridentatus]] | | [[Category: Tachypleus tridentatus]] |
- | [[Category: Aizawa, T]] | + | [[Category: Aizawa T]] |
- | [[Category: Demura, M]] | + | [[Category: Demura M]] |
- | [[Category: Fujitani, N]] | + | [[Category: Fujitani N]] |
- | [[Category: Kawabata, S]] | + | [[Category: Kawabata S]] |
- | [[Category: Kawano, K]] | + | [[Category: Kawano K]] |
- | [[Category: Kouno, T]] | + | [[Category: Kouno T]] |
- | [[Category: Mizuguchi, M]] | + | [[Category: Mizuguchi M]] |
- | [[Category: Nishimura, S]] | + | [[Category: Nishimura S]] |
- | [[Category: Nitta, K]] | + | [[Category: Nitta K]] |
- | [[Category: Osaki, T]] | + | [[Category: Osaki T]] |
- | [[Category: Alpha-helices & beta-sheet]]
| + | |
- | [[Category: Antibiotic]]
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- | [[Category: Antimicrobial]]
| + | |
- | [[Category: Antimicrobial protein]]
| + | |
- | [[Category: Fungicide]]
| + | |
- | [[Category: Secreted]]
| + | |
- | [[Category: Three disulfide bridge]]
| + | |
| Structural highlights
Function
BDEF_TACTR Significantly inhibits the growth of Gram-negative and Gram-positive bacteria and fungi in vitro.[1]
Publication Abstract from PubMed
Big defensin is a 79-residue peptide derived from hemocytes of the Japanese horseshoe crab. It has antimicrobial activities against Gram-positive and -negative bacteria. The amino acid sequence of big defensin can be divided into an N-terminal hydrophobic half and a C-terminal cationic half. Interestingly, the trypsin cleaves big defensin into two fragments, the N-terminal and C-terminal fragments, which are responsible for antimicrobial activity against Gram-positive and -negative bacteria, respectively. To explore the antimicrobial mechanism of big defensin, we determined the solution structure of mature big defensin and performed a titration experiment with DPC micelles. Big defensin has a novel defensin structure; the C-terminal domain adopts a beta-defensin structure, and the N-terminal domain forms a unique globular conformation. It is noteworthy that the hydrophobic N-terminal domain undergoes a conformational change in micelle solution, while the C-terminal domain remains unchanged. Here, we propose that the N-terminal domain achieves its antimicrobial activity in a novel fashion and explain that big defensin has developed a strategy different from those of other beta-defensins to suppress the growth of Gram-positive bacteria.
A novel beta-defensin structure: a potential strategy of big defensin for overcoming resistance by Gram-positive bacteria.,Kouno T, Fujitani N, Mizuguchi M, Osaki T, Nishimura S, Kawabata S, Aizawa T, Demura M, Nitta K, Kawano K Biochemistry. 2008 Oct 7;47(40):10611-9. Epub 2008 Sep 12. PMID:18785751[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Saito T, Kawabata S, Shigenaga T, Takayenoki Y, Cho J, Nakajima H, Hirata M, Iwanaga S. A novel big defensin identified in horseshoe crab hemocytes: isolation, amino acid sequence, and antibacterial activity. J Biochem. 1995 May;117(5):1131-7. PMID:8586631
- ↑ Kouno T, Fujitani N, Mizuguchi M, Osaki T, Nishimura S, Kawabata S, Aizawa T, Demura M, Nitta K, Kawano K. A novel beta-defensin structure: a potential strategy of big defensin for overcoming resistance by Gram-positive bacteria. Biochemistry. 2008 Oct 7;47(40):10611-9. Epub 2008 Sep 12. PMID:18785751 doi:http://dx.doi.org/10.1021/bi800957n
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