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5gke

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Current revision (11:34, 2 August 2023) (edit) (undo)
 
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<StructureSection load='5gke' size='340' side='right'caption='[[5gke]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='5gke' size='340' side='right'caption='[[5gke]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5gke]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_kodakaraensis_(strain_kod1) Pyrococcus kodakaraensis (strain kod1)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GKE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5GKE FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5gke]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis_KOD1 Thermococcus kodakarensis KOD1] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GKE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GKE FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5gkf|5gkf]], [[5gkg|5gkg]], [[5gkh|5gkh]], [[5gki|5gki]], [[5gkj|5gkj]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TK1898 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=69014 Pyrococcus kodakaraensis (strain KOD1)])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5gke FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gke OCA], [https://pdbe.org/5gke PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5gke RCSB], [https://www.ebi.ac.uk/pdbsum/5gke PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5gke ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5gke FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gke OCA], [http://pdbe.org/5gke PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gke RCSB], [http://www.ebi.ac.uk/pdbsum/5gke PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gke ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/NUCS_THEKO NUCS_THEKO]] Cleaves both 3' and 5' ssDNA extremities of branched DNA structures.
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[https://www.uniprot.org/uniprot/NUCS_THEKO NUCS_THEKO] Cleaves both 3' and 5' ssDNA extremities of branched DNA structures.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Hijikata, A]]
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[[Category: Synthetic construct]]
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[[Category: Ishino, S]]
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[[Category: Thermococcus kodakarensis KOD1]]
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[[Category: Ishino, Y]]
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[[Category: Hijikata A]]
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[[Category: Kouyama, K]]
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[[Category: Ishino S]]
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[[Category: Mayanagi, K]]
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[[Category: Ishino Y]]
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[[Category: Nakae, S]]
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[[Category: Kouyama K]]
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[[Category: Shirai, T]]
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[[Category: Mayanagi K]]
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[[Category: Tsuji, T]]
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[[Category: Nakae S]]
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[[Category: Yonezawa, K]]
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[[Category: Shirai T]]
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[[Category: Dna-binding]]
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[[Category: Tsuji T]]
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[[Category: Endonuclease]]
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[[Category: Yonezawa K]]
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[[Category: Hydrolase-dna complex]]
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Current revision

Structure of EndoMS-dsDNA1 complex

PDB ID 5gke

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OCA

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