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| | <StructureSection load='2cuo' size='340' side='right'caption='[[2cuo]], [[Resolution|resolution]] 1.33Å' scene=''> | | <StructureSection load='2cuo' size='340' side='right'caption='[[2cuo]], [[Resolution|resolution]] 1.33Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2cuo]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CUO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CUO FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2cuo]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Saimiriine_gammaherpesvirus_2 Saimiriine gammaherpesvirus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CUO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CUO FirstGlance]. <br> |
| - | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1itt|1itt]]</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.33Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cuo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cuo OCA], [http://pdbe.org/2cuo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cuo RCSB], [http://www.ebi.ac.uk/pdbsum/2cuo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2cuo ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cuo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cuo OCA], [https://pdbe.org/2cuo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cuo RCSB], [https://www.ebi.ac.uk/pdbsum/2cuo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cuo ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q80BK4_SHV2 Q80BK4_SHV2] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Hongo, C]] | + | [[Category: Saimiriine gammaherpesvirus 2]] |
| - | [[Category: Nishino, N]] | + | [[Category: Hongo C]] |
| - | [[Category: Noguchi, K]] | + | [[Category: Nishino N]] |
| - | [[Category: Okuyama, K]] | + | [[Category: Noguchi K]] |
| - | [[Category: Tanaka, Y]] | + | [[Category: Okuyama K]] |
| - | [[Category: Collagen model peptide]]
| + | [[Category: Tanaka Y]] |
| - | [[Category: Puckering]]
| + | |
| - | [[Category: Structural protein]]
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| - | [[Category: Triple-helix]]
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| Structural highlights
Function
Q80BK4_SHV2
Publication Abstract from PubMed
The crystal structure of a collagen-model peptide [(Pro-Pro-Gly)(9)](3) has been determined at 1.33 A resolution. Diffraction data were collected at 100 K using synchrotron radiation, which led to the first structural study of [(Pro-Pro-Gly)(n)](3) under cryogenic conditions. The crystals belong to the P2(1) space group with cell parameters of a = 25.95, b = 26.56, c = 80.14 Angstroms and beta = 90.0 degrees. The overall molecular conformation was consistent with the left-handed 7/2-helical model with an axial repeat of 20 A for native collagen. A total of 332 water molecules were found in an asymmetric unit. Proline residues in adjacent triple-helices exhibited three types of hydrophobic interactions. Furthermore, three types of hydrogen-bonding networks mediated by water molecules were observed between adjacent triple-helices. These hydrophobic interactions and hydrogen-bonding networks occurred at intervals of 20 Angstroms along the c-axis based on the previous sub-cell structures [(Pro-Pro-Gly)(n)](3) (n = 9, 10), which were also seen in the full-cell structure of [(Pro-Pro-Gly)(10)](3). Five proline residues at the Y position in the X-Y-Gly triplet were found in a down-puckering conformation, this being inconsistent with the recently proposed propensity-based hypothesis. These proline residues were forced to adopt opposing puckering because of the prevailing hydrophobic interaction between triple-helices compared with the Pro:Pro stacking interaction within a triple-helix.
Repetitive interactions observed in the crystal structure of a collagen-model peptide, [(Pro-Pro-Gly)9]3.,Hongo C, Noguchi K, Okuyama K, Tanaka Y, Nishino N J Biochem. 2005 Aug;138(2):135-44. PMID:16091587[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Hongo C, Noguchi K, Okuyama K, Tanaka Y, Nishino N. Repetitive interactions observed in the crystal structure of a collagen-model peptide, [(Pro-Pro-Gly)9]3. J Biochem. 2005 Aug;138(2):135-44. PMID:16091587 doi:138/2/135
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