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| <StructureSection load='2d1f' size='340' side='right'caption='[[2d1f]], [[Resolution|resolution]] 2.50Å' scene=''> | | <StructureSection load='2d1f' size='340' side='right'caption='[[2d1f]], [[Resolution|resolution]] 2.50Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2d1f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_tuberculosis"_(zopf_1883)_klein_1884 "bacillus tuberculosis" (zopf 1883) klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D1F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D1F FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2d1f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D1F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D1F FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Threonine_synthase Threonine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.3.1 4.2.3.1] </span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d1f OCA], [http://pdbe.org/2d1f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d1f RCSB], [http://www.ebi.ac.uk/pdbsum/2d1f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2d1f ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d1f OCA], [https://pdbe.org/2d1f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d1f RCSB], [https://www.ebi.ac.uk/pdbsum/2d1f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d1f ProSAT]</span></td></tr> |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/THRC_MYCTU THRC_MYCTU]] Catalyzes the gamma-elimination of phosphate from L-phosphohomoserine and the beta-addition of water to produce L-threonine.<ref>PMID:18621388</ref> | + | [https://www.uniprot.org/uniprot/THRC_MYCTU THRC_MYCTU] Catalyzes the gamma-elimination of phosphate from L-phosphohomoserine and the beta-addition of water to produce L-threonine.<ref>PMID:18621388</ref> |
| == Evolutionary Conservation == | | == Evolutionary Conservation == |
| [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| <jmolCheckbox> | | <jmolCheckbox> |
| <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d1/2d1f_consurf.spt"</scriptWhenChecked> | | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d1/2d1f_consurf.spt"</scriptWhenChecked> |
- | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
| <text>to colour the structure by Evolutionary Conservation</text> | | <text>to colour the structure by Evolutionary Conservation</text> |
| </jmolCheckbox> | | </jmolCheckbox> |
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| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Threonine synthase]] | + | [[Category: Mycobacterium tuberculosis]] |
- | [[Category: Bergfors, T]] | + | [[Category: Bergfors T]] |
- | [[Category: Covarrubias, A S]] | + | [[Category: Covarrubias AS]] |
- | [[Category: Hogbom, M]] | + | [[Category: Hogbom M]] |
- | [[Category: Jones, T A]] | + | [[Category: Jones TA]] |
- | [[Category: Mannerstedt, K]] | + | [[Category: Mannerstedt K]] |
- | [[Category: Mowbray, S L]] | + | [[Category: Mowbray SL]] |
- | [[Category: Oscarson, S]] | + | [[Category: Oscarson S]] |
- | [[Category: Amino acid synthesis]]
| + | |
- | [[Category: Lyase]]
| + | |
- | [[Category: Plp]]
| + | |
- | [[Category: Pyridoxal-5'-phosphate]]
| + | |
| Structural highlights
Function
THRC_MYCTU Catalyzes the gamma-elimination of phosphate from L-phosphohomoserine and the beta-addition of water to produce L-threonine.[1]
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Threonine biosynthesis is a general feature of prokaryotes, eukaryotic microorganisms, and higher plants. Since mammals lack the appropriate synthetic machinery, instead obtaining the amino acid through their diet, the pathway is a potential focus for the development of novel antibiotics, antifungal agents, and herbicides. Threonine synthase (TS), a pyridoxal-5-phosphate-dependent enzyme, catalyzes the final step in the pathway, in which L-homoserine phosphate and water are converted into threonine and inorganic phosphate. In the present publication, we report structural and functional studies of Mycobacterium tuberculosis TS, the product of the rv1295 (thrC) gene. The structure gives new insights into the catalytic mechanism of TSs in general, specifically by suggesting the direct involvement of the phosphate moiety of the cofactor, rather than the inorganic phosphate product, in transferring a proton from C4' to C(gamma) in the formation of the alphabeta-unsaturated aldimine. It further provides a basis for understanding why this enzyme has a higher pH optimum than has been reported elsewhere for TSs and gives rise to the prediction that the equivalent enzyme from Thermus thermophilus will exhibit similar behavior. A deletion of the relevant gene generated a strain of M. tuberculosis that requires threonine for growth; such auxotrophic strains are frequently attenuated in vivo, indicating that TS is a potential drug target in this organism.
Structural, biochemical, and in vivo investigations of the threonine synthase from Mycobacterium tuberculosis.,Covarrubias AS, Hogbom M, Bergfors T, Carroll P, Mannerstedt K, Oscarson S, Parish T, Jones TA, Mowbray SL J Mol Biol. 2008 Sep 5;381(3):622-33. Epub 2008 Jun 10. PMID:18621388[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Covarrubias AS, Hogbom M, Bergfors T, Carroll P, Mannerstedt K, Oscarson S, Parish T, Jones TA, Mowbray SL. Structural, biochemical, and in vivo investigations of the threonine synthase from Mycobacterium tuberculosis. J Mol Biol. 2008 Sep 5;381(3):622-33. Epub 2008 Jun 10. PMID:18621388 doi:10.1016/j.jmb.2008.05.086
- ↑ Covarrubias AS, Hogbom M, Bergfors T, Carroll P, Mannerstedt K, Oscarson S, Parish T, Jones TA, Mowbray SL. Structural, biochemical, and in vivo investigations of the threonine synthase from Mycobacterium tuberculosis. J Mol Biol. 2008 Sep 5;381(3):622-33. Epub 2008 Jun 10. PMID:18621388 doi:10.1016/j.jmb.2008.05.086
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