This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

5a1z

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Current revision

Cryo-EM structure of Dengue virus serotype 2 strain PVP94-07 complexed with human antibody 2D22 Fab at 37 degrees C

5a1z, resolution 6.90Å

Structural highlights

5a1z is a 12 chain structure with sequence from Dengue virus 2 and Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Electron Microscopy, Resolution 6.9Å
Experimental data:	Check to display Experimental Data
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

E0WXJ2_9FLAV Component of the viral RNA replication complex that functions in virion assembly and antagonizes the host immune response.[ARBA:ARBA00024317] Functions as a signal peptide for NS4B and is required for the interferon antagonism activity of the latter.[ARBA:ARBA00003504] Serine protease subunit NS2B: Required cofactor for the serine protease function of NS3.[PROSITE-ProRule:PRU00859]

Publication Abstract from PubMed

There are four closely-related dengue virus (DENV) serotypes. Infection with one serotype generates antibodies that may cross-react and enhance infection with other serotypes in a secondary infection. We demonstrated that DENV serotype 2 (DENV2)-specific human monoclonal antibody (HMAb) 2D22 is therapeutic in a mouse model of antibody-enhanced severe dengue disease. We determined the cryo-electron microscopy (cryo-EM) structures of HMAb 2D22 complexed with two different DENV2 strains. HMAb 2D22 binds across viral envelope (E) proteins in the dimeric structure, which probably blocks the E protein reorganization required for virus fusion. HMAb 2D22 "locks" two-thirds of or all dimers on the virus surface, depending on the strain, but neutralizes these DENV2 strains with equal potency. The epitope defined by HMAb 2D22 is a potential target for vaccines and therapeutics.

DENGUE VIRUS. Cryo-EM structure of an antibody that neutralizes dengue virus type 2 by locking E protein dimers.,Fibriansah G, Ibarra KD, Ng TS, Smith SA, Tan JL, Lim XN, Ooi JS, Kostyuchenko VA, Wang J, de Silva AM, Harris E, Crowe JE Jr, Lok SM Science. 2015 Jul 3;349(6243):88-91. doi: 10.1126/science.aaa8651. PMID:26138979^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Fibriansah G, Ibarra KD, Ng TS, Smith SA, Tan JL, Lim XN, Ooi JS, Kostyuchenko VA, Wang J, de Silva AM, Harris E, Crowe JE Jr, Lok SM. DENGUE VIRUS. Cryo-EM structure of an antibody that neutralizes dengue virus type 2 by locking E protein dimers. Science. 2015 Jul 3;349(6243):88-91. doi: 10.1126/science.aaa8651. PMID:26138979 doi:http://dx.doi.org/10.1126/science.aaa8651

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5a1z"

@@ Line 1: / Line 1: @@
 ==Cryo-EM structure of Dengue virus serotype 2 strain PVP94-07 complexed with human antibody 2D22 Fab at 37 degrees C==
-<StructureSection load='5a1z' size='340' side='right'caption='[[5a1z]], [[Resolution|resolution]] 6.90&Aring;' scene=''>
+<SX load='5a1z' size='340' side='right' viewer='molstar' caption='[[5a1z]], [[Resolution|resolution]] 6.90&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5a1z]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Dengue_virus_2 Dengue virus 2] and [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A1Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5A1Z FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5a1z]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Dengue_virus_2 Dengue virus 2] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5A1Z FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5a1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a1z OCA], [http://pdbe.org/5a1z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5a1z RCSB], [http://www.ebi.ac.uk/pdbsum/5a1z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5a1z ProSAT]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 6.9&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5a1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a1z OCA], [https://pdbe.org/5a1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5a1z RCSB], [https://www.ebi.ac.uk/pdbsum/5a1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5a1z ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/E0WXJ2_9FLAV E0WXJ2_9FLAV] Component of the viral RNA replication complex that functions in virion assembly and antagonizes the host immune response.[ARBA:ARBA00024317]  Functions as a signal peptide for NS4B and is required for the interferon antagonism activity of the latter.[ARBA:ARBA00003504]  Serine protease subunit NS2B: Required cofactor for the serine protease function of NS3.[PROSITE-ProRule:PRU00859]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 18: / Line 21: @@
 <references/>
 __TOC__
-</StructureSection>
+</SX>
 [[Category: Dengue virus 2]]
 [[Category: Homo sapiens]]
 [[Category: Large Structures]]
-[[Category: Fibriansah, G]]
+[[Category: Crowe Jr JE]]
-[[Category: Harris, E]]
+[[Category: Fibriansah G]]
-[[Category: Ibarra, K D]]
+[[Category: Harris E]]
-[[Category: Jr, J E.Crowe]]
+[[Category: Ibarra KD]]
-[[Category: Kostyuchenko, V A]]
+[[Category: Kostyuchenko VA]]
-[[Category: Lim, X N]]
+[[Category: Lim XN]]
-[[Category: Lok, S M]]
+[[Category: Lok SM]]
-[[Category: Ng, T S]]
+[[Category: Ng TS]]
-[[Category: Ooi, J S.G]]
+[[Category: Ooi JSG]]
-[[Category: Silva, A M.de]]
+[[Category: Smith SA]]
-[[Category: Smith, S A]]
+[[Category: Tan JL]]
-[[Category: Tan, J L]]
+[[Category: Wang J]]
-[[Category: Wang, J]]
+[[Category: De Silva AM]]
-[[Category: Cryo-em]]
-[[Category: Dengue virus]]
-[[Category: Human antibody]]
-[[Category: Neutralization]]
-[[Category: Virus]]

5a1z

From Proteopedia

Current revision

Cryo-EM structure of Dengue virus serotype 2 strain PVP94-07 complexed with human antibody 2D22 Fab at 37 degrees C

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox