Transposase 3D structures

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(New page: ==3D structures of transposase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Mu transposase **1tns, [[1tn...)
Current revision (10:05, 22 January 2024) (edit) (undo)
 
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==3D structures of transposase==
==3D structures of transposase==
-
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
+
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} - For a general description of the protein see [[Transposase]]
{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|
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**[[2ezk]], [[2ezl]] – MuMuA Iβ subdomain - NMR<br />
**[[2ezk]], [[2ezl]] – MuMuA Iβ subdomain - NMR<br />
**[[4fcy]] – MuMuA + DNA <br />
**[[4fcy]] – MuMuA + DNA <br />
 +
**[[1f6v]] – MuA C terminal – Escherichia virus Mu - NMR<br />
*Hermes transposase
*Hermes transposase
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**[[2bw3]] – fTra (mutant) - fly<br />
**[[2bw3]] – fTra (mutant) - fly<br />
**[[4d1q]], [[6dx0]], [[6dww]], [[6dwy]], [[6dwz]] – fTra (mutant) + DNA <br />
**[[4d1q]], [[6dx0]], [[6dww]], [[6dwy]], [[6dwz]] – fTra (mutant) + DNA <br />
 +
**[[8eb5]] – fTra BED domain 1-78 (mutant) + DNA <br />
 +
**[[8edg]], [[8sjd]] – fTra (mutant) + DNA – Cryo EM<br />
*Dra2 transposase
*Dra2 transposase
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**[[2xma]], [[2xqc]] – Dra2 + DNA <br />
**[[2xma]], [[2xqc]] – Dra2 + DNA <br />
**[[2xo6]] – Dra2 (mutant) + DNA <br />
**[[2xo6]] – Dra2 (mutant) + DNA <br />
 +
 +
*Tn3 transposase
 +
 +
**[[7qd8]] – BtTn5 – ''Bacillus thuringiensis'' – Cryo EM<br />
 +
**[[7qd4]], [[7qd5]], [[7qd6]] – BtTn5 (mutant) + DNA – Cryo EM<br />
*Tn5 transposase
*Tn5 transposase
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*Tn7 transposase
*Tn7 transposase
-
**[[5d17]] – EcTn7 C terminal <br />
+
**[[1f1z]] – EcTn7 tnsA <br />
-
**[[5d16]] – EcTn7 C terminal (mutant) <br />
+
**[[5d17]] – EcTn7 tnsE C terminal <br />
 +
**[[5d16]] – EcTn7 tnsE C terminal (mutant) <br />
 +
**[[1t0f]] – EcTn7 tnsA + tnsC <br />
 +
**[[7m9a]], [[7m9b]], [[7m9c]] – hTn7 tnsC + DNA + ADP – Cryo EM <br />
 +
**[[8aa5]] – ShTn7 tnsB + DNA – ''Scytonema hofmannii'' - Cryo EM <br />
 +
**[[7n6i]] – ShTn7 tnsC + TniQ + DNA + ATP' - Cryo EM <br />
 +
**[[7m99]] – ShTn7 tnsC + DNA + ATPgS - Cryo EM <br />
 +
**[[7plh]] – ShTn7 tnsC + DNA + AMPPNP Cryo EM <br />
 +
**[[7pla]] – ShTn7 cas12k + DNA + RNA - Cryo EM <br />
*Mos1 transposase
*Mos1 transposase
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**[[5cr4]] – SB catalytic domain – synthetic<br />
**[[5cr4]] – SB catalytic domain – synthetic<br />
**[[2m8e]] – SB PAI domain – synthetic - NMR<br />
**[[2m8e]] – SB PAI domain – synthetic - NMR<br />
-
**[[5unk]] – RED domain – ''Oncorhynchus mykiss'' - NMR<br />
+
**[[5unk]] – OmRED domain – ''Oncorhynchus mykiss'' - NMR<br />
 +
**[[6urs]] – OmSB PAI domain - NMR<br />
*DNA-mediated transposase
*DNA-mediated transposase
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*Piggyback transposase
*Piggyback transposase
-
**[[5lme]] – PBT C terminal – cabbage looper - NMR<br />
+
**[[6x68]], [[6x67]] – clPBT + DNA – cabbage looper – Cryo EM<br />
 +
**[[5lme]] – clPBT C terminal - NMR<br />
 +
**[[6zop]] – PBT Cys-rich domain 692-768 – ''Paramecium tetraaurelia'' - NMR<br />
 +
 
 +
*ISC transposase
 +
 
 +
**[[6xg8]], [[6xgx]], [[6xgw]] – ISC + DNA – ''Hungateiclostridium thermocellum''<br />
 +
**[[6dgc]] – ISC C-terminal catalytic domain - ''Sulfolobus'' <br />
 +
 
 +
*TniQ transposase
 +
 
 +
**[[6lnd]], [[6v9p]] – VcTniQ – ''Vibrio Cholerae'' <br />
 +
**[[6lnc]], [[6lnb]], [[6pig]], [[6pif]], [[6pij]], [[6uvn]] – VcTniQ + Cas6 + Cas7 + Cas8 + RNA – Cryo EM<br />
 +
**[[7oxd]] – ShTn7 TniqQ<br />
 +
 
 +
*Heltiron transposase
 +
 
 +
**[[7lcc]] – HT + DNA – bat – Cryo EM<br />
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

3D structures of transposase

Updated on 22-January-2024 - For a general description of the protein see Transposase

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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