|
|
(2 intermediate revisions not shown.) |
Line 3: |
Line 3: |
| <SX load='4v1a' size='340' side='right' viewer='molstar' caption='[[4v1a]], [[Resolution|resolution]] 3.40Å' scene=''> | | <SX load='4v1a' size='340' side='right' viewer='molstar' caption='[[4v1a]], [[Resolution|resolution]] 3.40Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4v1a]] is a 23 chain structure with sequence from [http://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V1A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4V1A FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4v1a]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V1A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V1A FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.4Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4v19|4v19]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v1a OCA], [https://pdbe.org/4v1a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v1a RCSB], [https://www.ebi.ac.uk/pdbsum/4v1a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v1a ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4v1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v1a OCA], [http://pdbe.org/4v1a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4v1a RCSB], [http://www.ebi.ac.uk/pdbsum/4v1a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4v1a ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/I3L9H6_PIG I3L9H6_PIG] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 27: |
Line 28: |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
| [[Category: Sus scrofa]] | | [[Category: Sus scrofa]] |
- | [[Category: Aebersold, R]] | + | [[Category: Aebersold R]] |
- | [[Category: Ban, N]] | + | [[Category: Ban N]] |
- | [[Category: Bieri, P]] | + | [[Category: Bieri P]] |
- | [[Category: Boehringer, D]] | + | [[Category: Boehringer D]] |
- | [[Category: Greber, B J]] | + | [[Category: Greber BJ]] |
- | [[Category: Leibundgut, M]] | + | [[Category: Leibundgut M]] |
- | [[Category: Leitner, A]] | + | [[Category: Leitner A]] |
- | [[Category: Schmitz, N]] | + | [[Category: Schmitz N]] |
- | [[Category: Cryo-em]]
| + | |
- | [[Category: Large ribosomal subunit]]
| + | |
- | [[Category: Mammalian mitochondrial ribosome]]
| + | |
- | [[Category: Mitoribosome]]
| + | |
- | [[Category: Ribosome]]
| + | |
- | [[Category: Translation]]
| + | |
| Structural highlights
Function
I3L9H6_PIG
Publication Abstract from PubMed
Mitochondrial ribosomes (mitoribosomes) are extensively modified ribosomes of bacterial descent specialized for the synthesis and insertion of membrane proteins that are critical for energy conversion and ATP production inside mitochondria. Mammalian mitoribosomes, which comprise 39S and 28S subunits, have diverged markedly from the bacterial ribosomes from which they are derived, rendering them unique compared to bacterial, eukaryotic cytosolic and fungal mitochondrial ribosomes. We have previously determined at 4.9 A resolution the architecture of the porcine (Sus scrofa) 39S subunit, which is highly homologous to the human mitoribosomal large subunit. Here we present the complete atomic structure of the porcine 39S large mitoribosomal subunit determined in the context of a stalled translating mitoribosome at 3.4 A resolution by cryo-electron microscopy and chemical crosslinking/mass spectrometry. The structure reveals the locations and the detailed folds of 50 mitoribosomal proteins, shows the highly conserved mitoribosomal peptidyl transferase active site in complex with its substrate transfer RNAs, and defines the path of the nascent chain in mammalian mitoribosomes along their idiosyncratic exit tunnel. Furthermore, we present evidence that a mitochondrial tRNA has become an integral component of the central protuberance of the 39S subunit where it architecturally substitutes for the absence of the 5S ribosomal RNA, a ubiquitous component of all cytoplasmic ribosomes.
The complete structure of the large subunit of the mammalian mitochondrial ribosome.,Greber BJ, Boehringer D, Leibundgut M, Bieri P, Leitner A, Schmitz N, Aebersold R, Ban N Nature. 2014 Oct 1. doi: 10.1038/nature13895. PMID:25271403[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Greber BJ, Boehringer D, Leibundgut M, Bieri P, Leitner A, Schmitz N, Aebersold R, Ban N. The complete structure of the large subunit of the mammalian mitochondrial ribosome. Nature. 2014 Oct 1. doi: 10.1038/nature13895. PMID:25271403 doi:http://dx.doi.org/10.1038/nature13895
|