5us9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:53, 14 May 2025) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 3: Line 3:
<SX load='5us9' size='340' side='right' viewer='molstar' caption='[[5us9]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
<SX load='5us9' size='340' side='right' viewer='molstar' caption='[[5us9]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5us9]] is a 60 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_bocavirus_4 Human bocavirus 4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5US9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5US9 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5us9]] is a 60 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_bocavirus_4 Human bocavirus 4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5US9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5US9 FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5urf|5urf]], [[5us7|5us7]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=645161 Human bocavirus 4])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5us9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5us9 OCA], [https://pdbe.org/5us9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5us9 RCSB], [https://www.ebi.ac.uk/pdbsum/5us9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5us9 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5us9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5us9 OCA], [http://pdbe.org/5us9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5us9 RCSB], [http://www.ebi.ac.uk/pdbsum/5us9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5us9 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CAPSD_HBOC4 CAPSD_HBOC4] Capsid proteins self-assembles to form an icosahedral capsid with a T=1 symmetry, about 26 nm in diameter, and consisting of 60 copies of three size variants of the capsid proteins, VP1, and VP3, which differ by the presence of an N-terminal extension in the minor protein VP1. The capsid has a channel at the 5-fold axis and there are densities extending the 5-fold axis into the interior of the capsid (PubMed:28331084). The capsid encapsulates the genomic ssDNA (Probable). Binding to the host receptors also induces capsid rearrangements leading to surface exposure of VP1 N-terminus, specifically its phospholipase A2-like region. The additional N-terminal region of isoform Minor capsid protein VP1, called VP1u, may serve as a lipolytic enzyme to breach the endosomal membrane during entry into host cell and might contribute to virus transport to the nucleus (By similarity).[UniProtKB:Q9PZT0]<ref>PMID:28331084</ref> <ref>PMID:28331084</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 24:
[[Category: Human bocavirus 4]]
[[Category: Human bocavirus 4]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Agbandje-McKenna, M]]
+
[[Category: Agbandje-McKenna M]]
-
[[Category: Mietzsch, M]]
+
[[Category: Mietzsch M]]
-
[[Category: Gastroenteritis]]
+
-
[[Category: Parvovirus]]
+
-
[[Category: Virus like particle]]
+

Current revision

Human bocavirus 4

5us9, resolution 3.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools