This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5y60

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:21, 27 March 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<SX load='5y60' size='340' side='right' viewer='molstar' caption='[[5y60]], [[Resolution|resolution]] 7.50&Aring;' scene=''>
<SX load='5y60' size='340' side='right' viewer='molstar' caption='[[5y60]], [[Resolution|resolution]] 7.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5y60]] is a 26 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y60 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y60 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5y60]] is a 26 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y60 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y60 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 7.5&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y60 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y60 OCA], [http://pdbe.org/5y60 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y60 RCSB], [http://www.ebi.ac.uk/pdbsum/5y60 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y60 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y60 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y60 OCA], [https://pdbe.org/5y60 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y60 RCSB], [https://www.ebi.ac.uk/pdbsum/5y60 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y60 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/VATE_THET8 VATE_THET8]] Produces ATP from ADP in the presence of a proton gradient across the membrane. [[http://www.uniprot.org/uniprot/VATD_THET8 VATD_THET8]] Produces ATP from ADP in the presence of a proton gradient across the membrane. [[http://www.uniprot.org/uniprot/VATC_THET8 VATC_THET8]] Produces ATP from ADP in the presence of a proton gradient across the membrane. [[http://www.uniprot.org/uniprot/VATB_THET8 VATB_THET8]] Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit. [[http://www.uniprot.org/uniprot/VATA_THET8 VATA_THET8]] Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. [[http://www.uniprot.org/uniprot/VATF_THET8 VATF_THET8]] Produces ATP from ADP in the presence of a proton gradient across the membrane.
+
[https://www.uniprot.org/uniprot/VATA_THET8 VATA_THET8] Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit.
-
<div style="background-color:#fffaf0;">
+
-
== Publication Abstract from PubMed ==
+
-
Proton translocating rotary ATPases couple ATP hydrolysis/synthesis, which occurs in the soluble domain, with proton flow through the membrane domain via a rotation of the common central rotor complex against the surrounding peripheral stator apparatus. Here, we present a large data set of single particle cryo-electron micrograph images of the V/A type H(+)-rotary ATPase from the bacterium Thermus thermophilus, enabling the identification of three rotational states based on the orientation of the rotor subunit. Using masked refinement and classification with signal subtractions, we obtain homogeneous reconstructions for the whole complexes and soluble V1 domains. These reconstructions are of higher resolution than any EM map of intact rotary ATPase reported previously, providing a detailed molecular basis for how the rotary ATPase maintains structural integrity of the peripheral stator apparatus, and confirming the existence of a clear proton translocation path from both sides of the membrane.
+
-
 
+
-
Cryo EM structure of intact rotary H(+)-ATPase/synthase from Thermus thermophilus.,Nakanishi A, Kishikawa JI, Tamakoshi M, Mitsuoka K, Yokoyama K Nat Commun. 2018 Jan 8;9(1):89. doi: 10.1038/s41467-017-02553-6. PMID:29311594<ref>PMID:29311594</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 5y60" style="background-color:#fffaf0;"></div>
+
==See Also==
==See Also==
*[[ATPase 3D structures|ATPase 3D structures]]
*[[ATPase 3D structures|ATPase 3D structures]]
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</SX>
</SX>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Thermus thermophilus hb8]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Kishikawa, J]]
+
[[Category: Kishikawa J]]
-
[[Category: Mitsuoka, K]]
+
[[Category: Mitsuoka K]]
-
[[Category: Nakanishi, A]]
+
[[Category: Nakanishi A]]
-
[[Category: Tamakoshi, M]]
+
[[Category: Tamakoshi M]]
-
[[Category: Yokoyama, K]]
+
[[Category: Yokoyama K]]
-
[[Category: Atp synthase]]
+
-
[[Category: Bioenergetic]]
+
-
[[Category: Motor protein]]
+
-
[[Category: Proton pump]]
+
-
[[Category: V-atpase]]
+

Current revision

V/A-type ATPase/synthase from Thermus thermophilus, rotational state 3.

5y60, resolution 7.50Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5y60"
Personal tools