This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6po2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:26, 20 March 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<SX load='6po2' size='340' side='right' viewer='molstar' caption='[[6po2]], [[Resolution|resolution]] 3.60&Aring;' scene=''>
<SX load='6po2' size='340' side='right' viewer='molstar' caption='[[6po2]], [[Resolution|resolution]] 3.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6po2]] is a 11 chain structure with sequence from [http://en.wikipedia.org/wiki/Bluetongue_virus_1 Bluetongue virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PO2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6PO2 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6po2]] is a 11 chain structure with sequence from [https://en.wikipedia.org/wiki/Bluetongue_virus_1 Bluetongue virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PO2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6PO2 FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35327 Bluetongue virus 1])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.6&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/RNA-directed_RNA_polymerase RNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.48 2.7.7.48] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6po2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6po2 OCA], [https://pdbe.org/6po2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6po2 RCSB], [https://www.ebi.ac.uk/pdbsum/6po2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6po2 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6po2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6po2 OCA], [http://pdbe.org/6po2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6po2 RCSB], [http://www.ebi.ac.uk/pdbsum/6po2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6po2 ProSAT]</span></td></tr>
+
</table>
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[https://www.uniprot.org/uniprot/Q1AE73_9VIRU Q1AE73_9VIRU]
-
Bluetongue virus (BTV), a major threat to livestock, is a multilayered, nonturreted member of the Reoviridae, a family of segmented dsRNA viruses characterized by endogenous RNA transcription through an RNA-dependent RNA polymerase (RdRp). To date, the structure of BTV RdRp has been unknown, limiting our mechanistic understanding of BTV transcription and hindering rational drug design effort targeting this essential enzyme. Here, we report the in situ structures of BTV RdRp VP1 in both the triple-layered virion and double-layered core, as determined by cryo-electron microscopy (cryoEM) and subparticle reconstruction. BTV RdRp has 2 unique motifs not found in other viral RdRps: a fingernail, attached to the conserved fingers subdomain, and a bundle of 3 helices: 1 from the palm subdomain and 2 from the N-terminal domain. BTV RdRp VP1 is anchored to the inner surface of the capsid shell via 5 asymmetrically arranged N termini of the inner capsid shell protein VP3A around the 5-fold axis. The structural changes of RdRp VP1 and associated capsid shell proteins between BTV virions and cores suggest that the detachment of the outer capsid proteins VP2 and VP5 during viral entry induces both global movements of the inner capsid shell and local conformational changes of the N-terminal latch helix (residues 34 to 51) of 1 inner capsid shell protein VP3A, priming RdRp VP1 within the capsid for transcription. Understanding this mechanism in BTV also provides general insights into RdRp activation and regulation during viral entry of other multilayered, nonturreted dsRNA viruses.
+
-
 
+
-
In situ structures of RNA-dependent RNA polymerase inside bluetongue virus before and after uncoating.,He Y, Shivakoti S, Ding K, Cui Y, Roy P, Zhou ZH Proc Natl Acad Sci U S A. 2019 Jul 26. pii: 1905849116. doi:, 10.1073/pnas.1905849116. PMID:31350350<ref>PMID:31350350</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 6po2" style="background-color:#fffaf0;"></div>
+
==See Also==
==See Also==
*[[RNA polymerase 3D structures|RNA polymerase 3D structures]]
*[[RNA polymerase 3D structures|RNA polymerase 3D structures]]
-
== References ==
+
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
-
<references/>
+
__TOC__
__TOC__
</SX>
</SX>
[[Category: Bluetongue virus 1]]
[[Category: Bluetongue virus 1]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: RNA-directed RNA polymerase]]
+
[[Category: Cui Y]]
-
[[Category: Cui, Y]]
+
[[Category: Ding K]]
-
[[Category: Ding, K]]
+
[[Category: He Y]]
-
[[Category: He, Y]]
+
[[Category: Roy P]]
-
[[Category: Roy, P]]
+
[[Category: Shivakoti S]]
-
[[Category: Shivakoti, S]]
+
[[Category: Zhou ZH]]
-
[[Category: Zhou, Z H]]
+
-
[[Category: Rna dependent rna polymerase]]
+
-
[[Category: Transferase]]
+
-
[[Category: Viral protein]]
+

Current revision

In situ structure of BTV RNA-dependent RNA polymerase in BTV core

6po2, resolution 3.60Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6po2"
Personal tools