6m4b
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 6m4b is ON HOLD Authors: Yokoyama, H., Suzuki, K. Description: 1510-N membrane-bound stomatin-specific protease S97A mutant [[Category: Unreleased ...) |
|||
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==1510-N membrane-bound stomatin-specific protease S97A mutant== | |
| + | <StructureSection load='6m4b' size='340' side='right'caption='[[6m4b]], [[Resolution|resolution]] 2.25Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[6m4b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M4B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M4B FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m4b OCA], [https://pdbe.org/6m4b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m4b RCSB], [https://www.ebi.ac.uk/pdbsum/6m4b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m4b ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/STOPP_PYRHO STOPP_PYRHO] Protease that cleaves its substrates preferentially near hydrophobic or aromatic amino acid residues. Can degrade casein and the stomatin homolog PH1511 (in vitro).<ref>PMID:15611110</ref> <ref>PMID:16574150</ref> <ref>PMID:24121343</ref> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The N-terminal region of the stomatin operon partner protein (STOPP) PH1510 (1510-N) from the hyperthermophilic archaeon Pyrococcus horikoshii is a serine protease with a catalytic Ser-Lys dyad (Ser97 and Lys138) and specifically cleaves the C-terminal hydrophobic region of the p-stomatin PH1511. In a form of human hemolytic anemia known as hereditary stomatocytosis, stomatin is deficient in the erythrocyte membrane owing to mis-trafficking. Stomatin is thought to act as an oligomeric scaffolding protein to support cell membranes. The cleavage of stomatin by STOPP might be involved in a regulatory system. Several crystal structures of 1510-N have previously been determined: the wild type, the K138A mutant and its complex with a substrate peptide. Here, the crystal structure of the S97A mutant of 1510-N (1510-N S97A) was determined at 2.25 A resolution. The structure contained two 1510-N S97A molecules in the asymmetric unit. On the superposition of one monomer of the 1510-N S97A and wild-type dimers, the S97A C(alpha) atom of the other monomer of 1510-N S97A deviated by 23 A from that of the wild type. This result indicates that 1510-N can greatly change the form of its dimer. Because of crystallographic symmetry in space group P6(5), a sixfold helical structure is constructed using the 1510-N dimer as a basic unit. This helical structure may be common to STOPP structures. | ||
| - | + | Inactive dimeric structure of the protease domain of stomatin operon partner protein.,Yokoyama H, Suzuki K, Hara K, Matsui I, Hashimoto H Acta Crystallogr D Struct Biol. 2020 Jun 1;76(Pt 6):515-520. doi: , 10.1107/S2059798320005021. Epub 2020 May 29. PMID:32496213<ref>PMID:32496213</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: Suzuki | + | <div class="pdbe-citations 6m4b" style="background-color:#fffaf0;"></div> |
| - | [[Category: Yokoyama | + | == References == |
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Pyrococcus horikoshii OT3]] | ||
| + | [[Category: Suzuki K]] | ||
| + | [[Category: Yokoyama H]] | ||
Current revision
1510-N membrane-bound stomatin-specific protease S97A mutant
| |||||||||||
