User:Grace A. Bassler/Sandbox 1
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< User:Grace A. Bassler(Difference between revisions)
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| - | =bd Oxidase= | + | <scene name='83/837228/Q_loop/2'>Text To Be Displayed</scene>=bd Oxidase= |
<StructureSection load='6RX4' size='350' frame='true' side='right' caption='bd Oxidase: 6RX4' scene=’’> | <StructureSection load='6RX4' size='350' frame='true' side='right' caption='bd Oxidase: 6RX4' scene=’’> | ||
<scene name='83/837228/Bd_oxidase/1'>bd Oxidase</scene> | <scene name='83/837228/Bd_oxidase/1'>bd Oxidase</scene> | ||
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== Introduction == | == Introduction == | ||
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| - | [[Image:cyd s.png|400 px|right|thumb|Figure 1: bd Oxidase Subunits.]] | ||
[https://en.wikipedia.org/wiki/Escherichia_coli ''E. coli''] | [https://en.wikipedia.org/wiki/Escherichia_coli ''E. coli''] | ||
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Second in-text citation<ref name="Safarian">PMID: 27126043</ref>. | Second in-text citation<ref name="Safarian">PMID: 27126043</ref>. | ||
| + | [[Image:cyd s.png|400 px|right|thumb|Figure 1: bd Oxidase Subunits.]] | ||
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=== Subunits === | === Subunits === | ||
| - | <scene name='83/837228/Cyda/3'>CydA | + | ''E. coli'' bd oxidase is made up of four individual subunits. The two major subunits, CydA and CydB, are each composed of one peripheral helix and two bundles of four transmembrane helices. The <scene name='83/837228/Cyda/3'>CydA subunit</scene> plays the most important role in the oxygen reduction reaction as it contains the Q-loop as well as all three heme groups. The <scene name='83/837228/Cydb/1'>CydB subunit</scene> harbors the ubiquinone molecule which provides structural support to the subunit that mimics the three hemes found in CydA. The remaining two subunits, CydS and CydX, are both single helix structures that assist in the oxygen reduction reaction. Unique to ''E. coli'', the <scene name='83/837228/Cyds/1'>CydS subunit</scene> binds to CydA to block oxygen from directly binding to heme b595. The <scene name='83/837228/Cydx/1'>CydX subunit</scene> promotes the assembly and stability of the oxidase complex. |
| - | <scene name='83/837228/Cydb/1'>CydB Subunit</scene> | ||
| - | + | insert citations & external links!** | |
| - | <scene name='83/837228/Cydx/1'>CydX Subunit</scene> | ||
| + | ===Q Loop=== | ||
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| + | <scene name='83/837228/Q_loop/1'>Q Loop</scene> | ||
=== Hemes === | === Hemes === | ||
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== Function == | == Function == | ||
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== Structural highlights == | == Structural highlights == | ||
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| - | This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | ||
Current revision
=bd Oxidase=
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References
- ↑ 1.0 1.1 Ransey E, Paredes E, Dey SK, Das SR, Heroux A, Macbeth MR. Crystal structure of the Entamoeba histolytica RNA lariat debranching enzyme EhDbr1 reveals a catalytic Zn(2+) /Mn(2+) heterobinucleation. FEBS Lett. 2017 Jul;591(13):2003-2010. doi: 10.1002/1873-3468.12677. Epub 2017, Jun 14. PMID:28504306 doi:http://dx.doi.org/10.1002/1873-3468.12677
- ↑ 2.0 2.1 Safarian S, Rajendran C, Muller H, Preu J, Langer JD, Ovchinnikov S, Hirose T, Kusumoto T, Sakamoto J, Michel H. Structure of a bd oxidase indicates similar mechanisms for membrane-integrated oxygen reductases. Science. 2016 Apr 29;352(6285):583-6. doi: 10.1126/science.aaf2477. PMID:27126043 doi:http://dx.doi.org/10.1126/science.aaf2477
