6k6n
From Proteopedia
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<StructureSection load='6k6n' size='340' side='right'caption='[[6k6n]], [[Resolution|resolution]] 2.00Å' scene=''> | <StructureSection load='6k6n' size='340' side='right'caption='[[6k6n]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[6k6n]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6K6N OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[6k6n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Simian_immunodeficiency_virus Simian immunodeficiency virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6K6N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6K6N FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.0002Å</td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6k6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6k6n OCA], [https://pdbe.org/6k6n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6k6n RCSB], [https://www.ebi.ac.uk/pdbsum/6k6n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6k6n ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q203Y4_SIV Q203Y4_SIV] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The human immunodeficiency virus (HIV) accessory protein Nef plays a major role in establishing and maintaining infection, particularly through immune evasion. Many HIV-2-infected people experience long-term viral control and survival, resembling HIV-1 elite control. HIV-2 Nef has overlapping but also distinct functions from HIV-1 Nef. Here we report the crystal structure of HIV-2 Nef core. The di-leucine sorting motif forms a helix bound to neighboring molecules, and moreover, isothermal titration calorimetry demonstrated that the CD3 endocytosis motif can directly bind to HIV-2 Nef, ensuring AP-2-mediated endocytosis for CD3. The highly conserved C-terminal region forms a alpha-helix, absent from HIV-1. We further determined the structure of simian immunodeficiency virus (SIV) Nef harboring this region, demonstrating similar C-terminal alpha-helix, which may contribute to AP-1 binding for MHC-I downregulation. These results provide insights into the distinct pathogenesis of HIV-2 infection. | ||
+ | |||
+ | Structure of HIV-2 Nef Reveals Features Distinct from HIV-1 Involved in Immune Regulation.,Hirao K, Andrews S, Kuroki K, Kusaka H, Tadokoro T, Kita S, Ose T, Rowland-Jones SL, Maenaka K iScience. 2020 Jan 24;23(1):100758. doi: 10.1016/j.isci.2019.100758. Epub 2019, Dec 9. PMID:31927483<ref>PMID:31927483</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6k6n" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Protein Nef 3D structures|Protein Nef 3D structures]] | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Andrews | + | [[Category: Simian immunodeficiency virus]] |
- | [[Category: Hirao | + | [[Category: Andrews S]] |
- | [[Category: Kita | + | [[Category: Hirao K]] |
- | [[Category: Kuroki | + | [[Category: Kita S]] |
- | [[Category: Kusaka | + | [[Category: Kuroki K]] |
- | [[Category: Maenaka | + | [[Category: Kusaka H]] |
- | [[Category: Ose | + | [[Category: Maenaka K]] |
- | [[Category: Rowland-Jones | + | [[Category: Ose T]] |
- | [[Category: Tadokoro | + | [[Category: Rowland-Jones S]] |
- | + | [[Category: Tadokoro T]] | |
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Current revision
Crystal structure of SIVmac239 Nef protein
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