3gqr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:44, 1 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='3gqr' size='340' side='right'caption='[[3gqr]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='3gqr' size='340' side='right'caption='[[3gqr]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3gqr]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Felis_silvestris_catus Felis silvestris catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GQR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3gqr]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Felis_catus Felis catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GQR FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3gqp|3gqp]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gqr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gqr OCA], [http://pdbe.org/3gqr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gqr RCSB], [http://www.ebi.ac.uk/pdbsum/3gqr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gqr ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gqr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gqr OCA], [https://pdbe.org/3gqr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gqr RCSB], [https://www.ebi.ac.uk/pdbsum/3gqr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gqr ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/HBA_FELCA HBA_FELCA]] Involved in oxygen transport from the lung to the various peripheral tissues. [[http://www.uniprot.org/uniprot/HBB_FELCA HBB_FELCA]] Involved in oxygen transport from the lung to the various peripheral tissues.
+
[https://www.uniprot.org/uniprot/HBA_FELCA HBA_FELCA] Involved in oxygen transport from the lung to the various peripheral tissues.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 20: Line 20:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gqr ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gqr ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
Haemoglobin is a tetrameric protein that plays a vital role in the transport of oxygen from the lungs to the tissues and of carbon dioxide back to the lungs. Even though a large amount of work has already been performed in this area, the study of the haemoglobin structures of avian and mammalian species is rather incomplete. Efforts are being made to understand the salient features of the species mentioned above. Here, whole blood plasma was collected from sheep and goat and purified by anion-exchange chromatography; the haemoglobins were crystallized by the hanging-drop vapour-diffusion method under unbuffered low-salt conditions using PEG 3350 as a precipitant. Data collection was carried out using a MAR345 image-plate detector system. Sheep haemoglobin crystallizes in the orthorhombic space group P2(1)2(1)2(1) with one whole biological molecule (alpha2beta2) in the asymmetric unit, with unit-cell parameters a = 60.231, b = 70.695, c = 131.479 A. In contrast, goat haemoglobin crystallizes in the triclinic system with two biological molecules (alpha2beta2) in the unit cell. The unit-cell parameters are a = 53.103, b = 69.382, c = 96.098 A, alpha = 110.867, beta = 91.133, gamma = 109.437 degrees.
 
- 
-
Crystallization of sheep (Ovis aries) and goat (Capra hircus) haemoglobins under unbuffered low-salt conditions.,Neelagandan K, Moorthy PS, Balasubramanian M, Ponnuswamy MN Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Oct 1;63(Pt, 10):887-9. Epub 2007 Sep 19. PMID:17909297<ref>PMID:17909297</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 3gqr" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Felis silvestris catus]]
+
[[Category: Felis catus]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Balasubramanian, M]]
+
[[Category: Balasubramanian M]]
-
[[Category: Moorthy, P Sathya]]
+
[[Category: Neelagandan K]]
-
[[Category: Neelagandan, K]]
+
[[Category: Ponnuswamy MN]]
-
[[Category: Ponnuswamy, M N]]
+
[[Category: Sathya Moorthy P]]
-
[[Category: Heme]]
+
-
[[Category: Iron]]
+
-
[[Category: Low oxygen affinity]]
+
-
[[Category: Methemoglobin]]
+
-
[[Category: Orthorhombic]]
+
-
[[Category: Oxygen storage]]
+
-
[[Category: Oxygen transport]]
+
-
[[Category: Polymorphism]]
+
-
[[Category: Transport]]
+

Current revision

Crystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.4 angstrom resolution

PDB ID 3gqr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools