6k3b

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<StructureSection load='6k3b' size='340' side='right'caption='[[6k3b]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
<StructureSection load='6k3b' size='340' side='right'caption='[[6k3b]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6k3b]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6K3B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6K3B FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6k3b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Legionella_pneumophila Legionella pneumophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6K3B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6K3B FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6k3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6k3b OCA], [http://pdbe.org/6k3b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6k3b RCSB], [http://www.ebi.ac.uk/pdbsum/6k3b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6k3b ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.974&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6k3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6k3b OCA], [https://pdbe.org/6k3b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6k3b RCSB], [https://www.ebi.ac.uk/pdbsum/6k3b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6k3b ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q5ZTL4_LEGPH Q5ZTL4_LEGPH]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Protein ubiquitination is one of the most prevalent post-translational modifications, controlling virtually every process in eukaryotic cells. Recently, the Legionella effector MavC was found to mediate a unique ubiquitination through transglutamination, linking ubiquitin (Ub) to UBE2N through Ub(Gln40) in a process that can be inhibited by another Legionella effector, Lpg2149. Here, we report the structures of MavC/UBE2N/Ub ternary complex, MavC/UBE2N-Ub (product) binary complex, and MavC/Lpg2149 binary complex. During the ubiquitination, the loop containing the modification site K92 of UBE2N undergoes marked conformational change, and Lpg2149 inhibits this ubiquitination through competing with Ub to bind MavC. Moreover, we found that MavC itself also exhibits weak deubiquitinase activity towards this non-canonical ubiquitination. Together, our study not only provides insights into the mechanism and inhibition of this transglutaminase-induced ubiquitination by MavC, but also sheds light on the future studies into UBE2N inhibition by this modification and deubiquitinases of this unique ubiquitination.
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Structural insights into the mechanism and inhibition of transglutaminase-induced ubiquitination by the Legionella effector MavC.,Mu Y, Wang Y, Huang Y, Li D, Han Y, Chang M, Fu J, Xie Y, Ren J, Wang H, Zhang Y, Luo ZQ, Feng Y Nat Commun. 2020 Apr 14;11(1):1774. doi: 10.1038/s41467-020-15645-7. PMID:32286321<ref>PMID:32286321</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6k3b" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Feng, Y]]
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[[Category: Legionella pneumophila]]
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[[Category: Han, Y]]
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[[Category: Feng Y]]
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[[Category: Li, D]]
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[[Category: Han Y]]
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[[Category: Mu, Y]]
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[[Category: Li D]]
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[[Category: Wang, Y]]
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[[Category: Mu Y]]
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[[Category: Antitoxin]]
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[[Category: Wang Y]]
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[[Category: Complex]]
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[[Category: Deamidase]]
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[[Category: Metaeffector]]
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Current revision

Crystal structure of Lpg2147-Lpg2149 complex

PDB ID 6k3b

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