6l1g

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<StructureSection load='6l1g' size='340' side='right'caption='[[6l1g]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='6l1g' size='340' side='right'caption='[[6l1g]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6l1g]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L1G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6L1G FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6l1g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803_substr._Kazusa Synechocystis sp. PCC 6803 substr. Kazusa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L1G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6L1G FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protochlorophyllide_reductase Protochlorophyllide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.1.33 1.3.1.33] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6l1g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l1g OCA], [http://pdbe.org/6l1g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6l1g RCSB], [http://www.ebi.ac.uk/pdbsum/6l1g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6l1g ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6l1g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l1g OCA], [https://pdbe.org/6l1g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6l1g RCSB], [https://www.ebi.ac.uk/pdbsum/6l1g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6l1g ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/POR_SYNY3 POR_SYNY3]] Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide).
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[https://www.uniprot.org/uniprot/POR_SYNY3 POR_SYNY3] Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide).
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The reduction of protochlorophyllide (Pchlide) to chlorophyllide (Chlide) is the penultimate step of chlorophyll biosynthesis. In oxygenic photosynthetic bacteria, algae, and plants, this reaction can be catalyzed by the light-dependent Pchlide oxidoreductase (LPOR), a member of the short-chain dehydrogenase superfamily sharing a conserved Rossmann fold for NAD(P)H binding and the catalytic activity. Whereas modeling and simulation approaches have been used to study the catalytic mechanism of this light-driven reaction, key details of the LPOR structure remain unclear. We determined the crystal structures of LPOR from two cyanobacteria, Synechocystis sp. PCC 6803 and Thermosynechococcus elongatus Structural analysis defines the LPOR core fold, outlines the LPOR-NADPH interaction network, identifies the residues forming the substrate cavity and the proton-relay path, and reveals the role of the LPOR-specific loop. These findings provide a basis for understanding the structure-function relationships of the light-driven Pchlide reduction.
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Crystal structures of cyanobacterial light-dependent protochlorophyllide oxidoreductase.,Dong CS, Zhang WL, Wang Q, Li YS, Wang X, Zhang M, Liu L Proc Natl Acad Sci U S A. 2020 Mar 31. pii: 1920244117. doi:, 10.1073/pnas.1920244117. PMID:32234783<ref>PMID:32234783</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6l1g" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Protochlorophyllide reductase]]
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[[Category: Synechocystis sp. PCC 6803 substr. Kazusa]]
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[[Category: Dong, C]]
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[[Category: Dong C]]
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[[Category: Liu, L]]
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[[Category: Liu L]]
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[[Category: Wang, X]]
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[[Category: Wang X]]
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[[Category: Chlorophyll biosynthesis]]
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[[Category: Nadph]]
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[[Category: Oxidoreductase]]
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[[Category: Photocatalysis]]
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Current revision

Crystal structure of light-dependent protochlorophyllide oxidoreductase from Synechocystis sp. PCC 6803

PDB ID 6l1g

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