This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5cx8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:12, 21 June 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5cx8' size='340' side='right'caption='[[5cx8]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='5cx8' size='340' side='right'caption='[[5cx8]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5cx8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porgi Porgi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CX8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CX8 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5cx8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis_W83 Porphyromonas gingivalis W83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CX8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CX8 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3DO:3-DEOXY-BETA-D-RIBO-HEXOPYRANOSE'>3DO</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=RP3:3-DEOXY-D-RIBOFURANOSE-5-PHOSPHATE'>RP3</scene>, <scene name='pdbligand=TG6:6-O-PHOSPHONO-D-TAGATOSE'>TG6</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3DO:3-DEOXY-BETA-D-RIBO-HEXOPYRANOSE'>3DO</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=RP3:3-DEOXY-D-RIBOFURANOSE-5-PHOSPHATE'>RP3</scene>, <scene name='pdbligand=TG6:6-O-PHOSPHONO-D-TAGATOSE'>TG6</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cx8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cx8 OCA], [https://pdbe.org/5cx8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cx8 RCSB], [https://www.ebi.ac.uk/pdbsum/5cx8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cx8 ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ragB, PG_0186 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 PORGI])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cx8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cx8 OCA], [http://pdbe.org/5cx8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cx8 RCSB], [http://www.ebi.ac.uk/pdbsum/5cx8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5cx8 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/F5H948_PORGI F5H948_PORGI]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Porgi]]
+
[[Category: Porphyromonas gingivalis W83]]
-
[[Category: Garcia-Ferrer, I]]
+
[[Category: Garcia-Ferrer I]]
-
[[Category: Gomis-Ruth, F X]]
+
[[Category: Gomis-Ruth FX]]
-
[[Category: Goulas, T]]
+
[[Category: Goulas T]]
-
[[Category: Hutcherson, J A]]
+
[[Category: Hutcherson JA]]
-
[[Category: Potempa, B A]]
+
[[Category: Potempa BA]]
-
[[Category: Potempa, J]]
+
[[Category: Potempa J]]
-
[[Category: Scott, D A]]
+
[[Category: Scott DA]]
-
[[Category: Major immunodominant virulence factor]]
+
-
[[Category: Membrane protein]]
+

Current revision

Structure of RagB, a major immunodominant virulence factor of Porphyromonas gingivalis.

PDB ID 5cx8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools