This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6ryx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:31, 24 January 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='6ryx' size='340' side='right'caption='[[6ryx]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
<StructureSection load='6ryx' size='340' side='right'caption='[[6ryx]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6ryx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Colgm Colgm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RYX OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6RYX FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6ryx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Colletotrichum_graminicola_M1.001 Colletotrichum graminicola M1.001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RYX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RYX FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.65&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GLRG_02805 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=645133 COLGM])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aryl-alcohol_oxidase Aryl-alcohol oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.3.7 1.1.3.7] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ryx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ryx OCA], [https://pdbe.org/6ryx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ryx RCSB], [https://www.ebi.ac.uk/pdbsum/6ryx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ryx ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6ryx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ryx OCA], [http://pdbe.org/6ryx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ryx RCSB], [http://www.ebi.ac.uk/pdbsum/6ryx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ryx ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/E3Q9X3_COLGM E3Q9X3_COLGM]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Aryl-alcohol oxidase]]
+
[[Category: Colletotrichum graminicola M1 001]]
-
[[Category: Colgm]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Davies, G J]]
+
[[Category: Davies GJ]]
-
[[Category: Offen, W A]]
+
[[Category: Henrissat B]]
-
[[Category: 5-hydroxymethylfurfural]]
+
[[Category: Offen WA]]
-
[[Category: Auxiliary activity]]
+
-
[[Category: Copper radical oxidase]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Copper oxidase from Colletotrichum graminicola

PDB ID 6ryx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools