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| | <StructureSection load='5di3' size='340' side='right'caption='[[5di3]], [[Resolution|resolution]] 2.50Å' scene=''> | | <StructureSection load='5di3' size='340' side='right'caption='[[5di3]], [[Resolution|resolution]] 2.50Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5di3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlre Chlre]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DI3 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5DI3 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5di3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DI3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DI3 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ARL13, CHLREDRAFT_195529 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3055 CHLRE]), ARL3, CHLREDRAFT_128761 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3055 CHLRE])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5di3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5di3 OCA], [http://pdbe.org/5di3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5di3 RCSB], [http://www.ebi.ac.uk/pdbsum/5di3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5di3 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5di3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5di3 OCA], [https://pdbe.org/5di3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5di3 RCSB], [https://www.ebi.ac.uk/pdbsum/5di3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5di3 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/ARL13_CHLRE ARL13_CHLRE]] Cilium-specific protein required to control the microtubule-based, ciliary axoneme structure. May act by maintaining the association between IFT subcomplexes A and B (By similarity). [[http://www.uniprot.org/uniprot/ARL3_CHLRE ARL3_CHLRE]] Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). Required for normal cytokinesis and cilia signaling. Required for targeting proteins to the ciliary membrane by releasing myristoylated protein from unc119 cargo adapters into the cilium.[UniProtKB:P36405] | + | [https://www.uniprot.org/uniprot/ARL13_CHLRE ARL13_CHLRE] Cilium-specific protein required to control the microtubule-based, ciliary axoneme structure. May act by maintaining the association between IFT subcomplexes A and B (By similarity). |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Chlre]] | + | [[Category: Chlamydomonas reinhardtii]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Falk, N]] | + | [[Category: Falk N]] |
| - | [[Category: Giessl, A]] | + | [[Category: Giessl A]] |
| - | [[Category: Gotthardt, K]] | + | [[Category: Gotthardt K]] |
| - | [[Category: Koerner, C]] | + | [[Category: Koerner C]] |
| - | [[Category: Lokaj, M]] | + | [[Category: Lokaj M]] |
| - | [[Category: Wittinghofer, A]] | + | [[Category: Wittinghofer A]] |
| - | [[Category: Adp ribosylation like protein]]
| + | |
| - | [[Category: Complex]]
| + | |
| - | [[Category: G-protein]]
| + | |
| - | [[Category: Guanine nucleotide exchange factor]]
| + | |
| - | [[Category: Hydrolase]]
| + | |
| Structural highlights
Function
ARL13_CHLRE Cilium-specific protein required to control the microtubule-based, ciliary axoneme structure. May act by maintaining the association between IFT subcomplexes A and B (By similarity).
Publication Abstract from PubMed
Small G-proteins of the ADP-ribosylation-factor-like (Arl) subfamily have been shown to be crucial to ciliogenesis and cilia maintenance. Active Arl3 is involved in targeting and releasing lipidated cargo proteins from their carriers PDE6delta and UNC119a/b to the cilium. However, the Guanine-Nucleotide-Exchange-factor (GEF) which activates Arl3 is unknown. Here we show that the ciliary G-protein Arl13B mutated in Joubert-Syndrome is the GEF for Arl3 and its function is conserved in evolution. The GEF activity of Arl13B is mediated by the G-domain plus an additional C-terminal helix. The switch regions of Arl13B are involved in the interaction with Arl3. Overexpression of Arl13B in mammalian cell lines leads to an increased Arl3*GTP level, whereas Arl13B Joubert-Syndrome patient mutations impair GEF activity and thus Arl3 activation. We anticipate that through Arl13B's exclusive ciliary localization, Arl3 activation is spatially restricted and thereby an Arl3*GTP compartment generated where ciliary cargo is specifically released.
A G-protein activation cascade from Arl13B to Arl3 and implications for ciliary targeting of lipidated proteins.,Gotthardt K, Lokaj M, Koerner C, Falk N, Giessl A, Wittinghofer A Elife. 2015 Nov 9;4. pii: e11859. doi: 10.7554/eLife.11859. PMID:26551564[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Gotthardt K, Lokaj M, Koerner C, Falk N, Giessl A, Wittinghofer A. A G-protein activation cascade from Arl13B to Arl3 and implications for ciliary targeting of lipidated proteins. Elife. 2015 Nov 9;4. pii: e11859. doi: 10.7554/eLife.11859. PMID:26551564 doi:http://dx.doi.org/10.7554/eLife.11859
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