6vhc

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Current revision (14:37, 6 March 2024) (edit) (undo)
 
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<StructureSection load='6vhc' size='340' side='right'caption='[[6vhc]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
<StructureSection load='6vhc' size='340' side='right'caption='[[6vhc]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6vhc]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VHC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6VHC FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6vhc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VHC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6VHC FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron crystallography, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6clj|6clj]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6vhc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vhc OCA], [http://pdbe.org/6vhc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6vhc RCSB], [http://www.ebi.ac.uk/pdbsum/6vhc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6vhc ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vhc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vhc OCA], [https://pdbe.org/6vhc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vhc RCSB], [https://www.ebi.ac.uk/pdbsum/6vhc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vhc ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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We previously demonstrated that microcrystal electron diffraction (MicroED) can be used to determine atomic-resolution structures from vanishingly small three-dimensional crystals. Here, we present an example of an experimentally phased structure using only MicroED data. The structure of a seven-residue peptide is solved starting from differences to the diffraction intensities induced by structural changes due to radiation damage. The same wedge of reciprocal space was recorded twice by continuous-rotation MicroED from a set of 11 individual crystals. The data from the first pass were merged to make a "low-dose dataset." The data from the second pass were similarly merged to form a "damaged dataset." Differences between these two datasets were used to identify a single heavy-atom site from a Patterson difference map, and initial phases were generated. Finally, the structure was completed by iterative cycles of modeling and refinement.
 
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Experimental Phasing of MicroED Data Using Radiation Damage.,Martynowycz MW, Hattne J, Gonen T Structure. 2020 Feb 4. pii: S0969-2126(20)30008-3. doi:, 10.1016/j.str.2020.01.008. PMID:32023481<ref>PMID:32023481</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 6vhc" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Gonen, T]]
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[[Category: Synthetic construct]]
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[[Category: Hattne, J]]
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[[Category: Gonen T]]
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[[Category: Martynowycz, M W]]
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[[Category: Hattne J]]
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[[Category: Damage]]
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[[Category: Martynowycz MW]]
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[[Category: Microed]]
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[[Category: Phasing]]
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[[Category: Protein fibril]]
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[[Category: Rip]]
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Current revision

1.4A damaged structure of GSNQNNF used to determine initial phases from radiation damage

PDB ID 6vhc

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