5fex

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Current revision (06:48, 19 July 2023) (edit) (undo)
 
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<StructureSection load='5fex' size='340' side='right'caption='[[5fex]], [[Resolution|resolution]] 1.32&Aring;' scene=''>
<StructureSection load='5fex' size='340' side='right'caption='[[5fex]], [[Resolution|resolution]] 1.32&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5fex]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FEX OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5FEX FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5fex]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FEX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FEX FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5AD:5-DEOXYADENOSINE'>5AD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=MET:METHIONINE'>MET</scene>, <scene name='pdbligand=SEC:SELENOCYSTEINE'>SEC</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.32&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=OTY:2-HYDROXY-L-TYROSINE'>OTY</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5AD:5-DEOXYADENOSINE'>5AD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=MET:METHIONINE'>MET</scene>, <scene name='pdbligand=OTY:2-HYDROXY-L-TYROSINE'>OTY</scene>, <scene name='pdbligand=SEC:SELENOCYSTEINE'>SEC</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TM_1269, THEMA_07990, Tmari_1274 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fex FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fex OCA], [https://pdbe.org/5fex PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fex RCSB], [https://www.ebi.ac.uk/pdbsum/5fex PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fex ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5fex FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fex OCA], [http://pdbe.org/5fex PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fex RCSB], [http://www.ebi.ac.uk/pdbsum/5fex PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fex ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/HYDE_THEMA HYDE_THEMA]] Required for the maturation of the [FeFe]-hydrogenase HydA (By similarity). Catalyzes the reductive cleavage of S-adenosyl-L-methionine (in vitro), suggesting it may contribute to the biosynthesis of an essential sulfur-containing ligand that binds to the hydrogenase active site [2Fe-2S] cluster (PubMed:16137685).[UniProtKB:Q97IK9]<ref>PMID:16137685</ref>
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[https://www.uniprot.org/uniprot/HYDE_THEMA HYDE_THEMA] Required for the maturation of the [FeFe]-hydrogenase HydA (By similarity). Catalyzes the reductive cleavage of S-adenosyl-L-methionine (in vitro), suggesting it may contribute to the biosynthesis of an essential sulfur-containing ligand that binds to the hydrogenase active site [2Fe-2S] cluster (PubMed:16137685).[UniProtKB:Q97IK9]<ref>PMID:16137685</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Atcc 43589]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Amara, P]]
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[[Category: Thermotoga maritima]]
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[[Category: Benjdia, A]]
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[[Category: Amara P]]
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[[Category: Berteau, O]]
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[[Category: Benjdia A]]
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[[Category: Favier, A]]
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[[Category: Berteau O]]
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[[Category: Fontecilla-Camps, J C]]
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[[Category: Favier A]]
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[[Category: Martin, L]]
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[[Category: Fontecilla-Camps JC]]
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[[Category: Mouesca, J M]]
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[[Category: Martin L]]
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[[Category: Nicolet, Y]]
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[[Category: Mouesca JM]]
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[[Category: Rohac, R]]
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[[Category: Nicolet Y]]
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[[Category: Ruffie, P]]
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[[Category: Rohac R]]
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[[Category: Complex]]
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[[Category: Ruffie P]]
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[[Category: Fefe-hydrogenase maturase]]
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[[Category: Oxidoreductase]]
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[[Category: Radical sam enzyme]]
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[[Category: Thazolidine]]
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Current revision

HydE from T. maritima in complex with Se-adenosyl-L-selenocysteine (tfinal of the reaction)

PDB ID 5fex

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