1baw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:34, 7 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1baw.gif|left|200px]]
 
-
<!--
+
==PLASTOCYANIN FROM PHORMIDIUM LAMINOSUM==
-
The line below this paragraph, containing "STRUCTURE_1baw", creates the "Structure Box" on the page.
+
<StructureSection load='1baw' size='340' side='right'caption='[[1baw]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1baw]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Phormidium_laminosum Phormidium laminosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BAW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BAW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_1baw| PDB=1baw | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1baw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1baw OCA], [https://pdbe.org/1baw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1baw RCSB], [https://www.ebi.ac.uk/pdbsum/1baw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1baw ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PLAS_PHOLA PLAS_PHOLA] Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ba/1baw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1baw ConSurf].
 +
<div style="clear:both"></div>
-
'''PLASTOCYANIN FROM PHORMIDIUM LAMINOSUM'''
+
==See Also==
-
 
+
*[[Plastocyanin 3D structures|Plastocyanin 3D structures]]
-
 
+
__TOC__
-
==Overview==
+
</StructureSection>
-
The crystal structure of the 'blue' copper protein plastocyanin from the cyanobacterium Phormidium laminosum has been solved and refined using 2.8 A X--ray data. P. laminosum plastocyanin crystallizes in space group P43212 with unit-cell dimensions a = 86.57, c = 91.47 A and with three protein molecules per asymmetric unit. The final residual R is 19.9%. The structure was solved using molecular replacement with a search model based on the crystal structure of a close homologue, Anabaena variabilis plastocyanin (66% sequence identity). The molecule of P. laminosum plastocyanin has 105 amino-acid residues. The single Cu atom is coordinated by the same residues - two histidines, a cysteine and a methionine - as in other plastocyanins. In the crystal structure, the three molecules of the asymmetric unit are related by a non-crystallographic threefold axis. A Zn atom lies between each pair of neighbouring molecules in this ensemble, being coordinated by a surface histidine residue of one molecule and by two aspartates of the other.
+
[[Category: Large Structures]]
-
 
+
-
==About this Structure==
+
-
1BAW is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Phormidium_laminosum Phormidium laminosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BAW OCA].
+
-
 
+
-
==Reference==
+
-
The structure of plastocyanin from the cyanobacterium Phormidium laminosum., Bond CS, Bendall DS, Freeman HC, Guss JM, Howe CJ, Wagner MJ, Wilce MC, Acta Crystallogr D Biol Crystallogr. 1999 Feb;55(Pt 2):414-21. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10089349 10089349]
+
[[Category: Phormidium laminosum]]
[[Category: Phormidium laminosum]]
-
[[Category: Single protein]]
+
[[Category: Bendall DS]]
-
[[Category: Bendall, D S.]]
+
[[Category: Bond CS]]
-
[[Category: Bond, C S.]]
+
[[Category: Freeman HC]]
-
[[Category: Freeman, H C.]]
+
[[Category: Guss JM]]
-
[[Category: Guss, J M.]]
+
[[Category: Howe CJ]]
-
[[Category: Howe, C J.]]
+
[[Category: Wagner MJ]]
-
[[Category: Wagner, M J.]]
+
-
[[Category: Blue copper protein]]
+
-
[[Category: Cyanobacteria]]
+
-
[[Category: Electron transfer]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 11:17:19 2008''
+

Current revision

PLASTOCYANIN FROM PHORMIDIUM LAMINOSUM

PDB ID 1baw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools