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| | ==NMR solution structure of Midi peptide designed based on m-conotoxins== | | ==NMR solution structure of Midi peptide designed based on m-conotoxins== |
| - | <StructureSection load='2lu6' size='340' side='right'caption='[[2lu6]], [[NMR_Ensembles_of_Models | 19 NMR models]]' scene=''> | + | <StructureSection load='2lu6' size='340' side='right'caption='[[2lu6]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2lu6]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LU6 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2LU6 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2lu6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Conus_bullatus Conus bullatus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LU6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LU6 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2lu6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lu6 OCA], [http://pdbe.org/2lu6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2lu6 RCSB], [http://www.ebi.ac.uk/pdbsum/2lu6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2lu6 ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 19 models</td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lu6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lu6 OCA], [https://pdbe.org/2lu6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lu6 RCSB], [https://www.ebi.ac.uk/pdbsum/2lu6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lu6 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/CM3C_CONBU CM3C_CONBU] Mu-conotoxins block voltage-gated sodium channels. Extremely potent inhibitor of Nav1.4/SCN4A (96% inhibition at 1 uM). The inhibition is very slowly reversible.<ref>PMID:18950653</ref> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| | + | [[Category: Conus bullatus]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Dyubankova, N]] | + | [[Category: Dyubankova N]] |
| - | [[Category: Herdewijn, P]] | + | [[Category: Herdewijn P]] |
| - | [[Category: Lescrinier, E]] | + | [[Category: Lescrinier E]] |
| - | [[Category: Peigneur, S]] | + | [[Category: Peigneur S]] |
| - | [[Category: Stevens, M]] | + | [[Category: Stevens M]] |
| - | [[Category: Tytgat, J]] | + | [[Category: Tytgat J]] |
| - | [[Category: Buiiic]]
| + | |
| - | [[Category: De novo protein]]
| + | |
| - | [[Category: Kiiia]]
| + | |
| - | [[Category: M-conotoxin]]
| + | |
| - | [[Category: Toxin]]
| + | |
| Structural highlights
Function
CM3C_CONBU Mu-conotoxins block voltage-gated sodium channels. Extremely potent inhibitor of Nav1.4/SCN4A (96% inhibition at 1 uM). The inhibition is very slowly reversible.[1]
Publication Abstract from PubMed
To date, cone snail toxins ("conotoxins") are of great interest in the pursuit of novel subtype-selective modulators of voltage-gated sodium channels (Na(v)s). Na(v)s participate in a wide range of electrophysiological processes. Consequently, their malfunctioning has been associated with numerous diseases. The development of subtype-selective modulators of Na(v)s remains highly important in the treatment of such disorders. In current research, a series of novel, synthetic, and bioactive compounds were designed based on two naturally occurring mu-conotoxins that target Na(v)s. The initial designed peptide contains solely 13 amino acids and was therefore named "Mini peptide." It was derived from the mu-conotoxins KIIIA and BuIIIC. Based on this Mini peptide, 10 analogues were subsequently developed, comprising 12-16 amino acids with two disulfide bridges. Following appropriate folding and mass verification, blocking effects on Na(v)s were investigated. The most promising compound established an IC(50) of 34.1 +/- 0.01 nM (R2-Midi on Na(v)1.2). An NMR structure of one of our most promising compounds was determined. Surprisingly, this structure does not reveal an alpha-helix. We prove that it is possible to design small peptides based on known pharmacophores of mu-conotoxins without losing their potency and selectivity. These data can provide crucial material for further development of conotoxin-based therapeutics.
Design of bioactive peptides from naturally occurring mu-conotoxin structures.,Stevens M, Peigneur S, Dyubankova N, Lescrinier E, Herdewijn P, Tytgat J J Biol Chem. 2012 Sep 7;287(37):31382-92. doi: 10.1074/jbc.M112.375733. Epub 2012, Jul 6. PMID:22773842[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Holford M, Zhang MM, Gowd KH, Azam L, Green BR, Watkins M, Ownby JP, Yoshikami D, Bulaj G, Olivera BM. Pruning nature: Biodiversity-derived discovery of novel sodium channel blocking conotoxins from Conus bullatus. Toxicon. 2009 Jan;53(1):90-8. doi: 10.1016/j.toxicon.2008.10.017. Epub 2008 Nov, 20. PMID:18950653 doi:http://dx.doi.org/10.1016/j.toxicon.2008.10.017
- ↑ Stevens M, Peigneur S, Dyubankova N, Lescrinier E, Herdewijn P, Tytgat J. Design of bioactive peptides from naturally occurring mu-conotoxin structures. J Biol Chem. 2012 Sep 7;287(37):31382-92. doi: 10.1074/jbc.M112.375733. Epub 2012, Jul 6. PMID:22773842 doi:10.1074/jbc.M112.375733
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