6l1y

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Current revision (10:49, 22 November 2023) (edit) (undo)
 
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==structure of gp120/CD4 with a non-canonical surface==
==structure of gp120/CD4 with a non-canonical surface==
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<StructureSection load='6l1y' size='340' side='right'caption='[[6l1y]]' scene=''>
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<StructureSection load='6l1y' size='340' side='right'caption='[[6l1y]], [[Resolution|resolution]] 2.47&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L1Y OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6L1Y FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6l1y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L1Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6L1Y FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6l1y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l1y OCA], [http://pdbe.org/6l1y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6l1y RCSB], [http://www.ebi.ac.uk/pdbsum/6l1y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6l1y ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.469&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6l1y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l1y OCA], [https://pdbe.org/6l1y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6l1y RCSB], [https://www.ebi.ac.uk/pdbsum/6l1y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6l1y ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CD4_HUMAN CD4_HUMAN] Accessory protein for MHC class-II antigen/T-cell receptor interaction. May regulate T-cell activation. Induces the aggregation of lipid rafts.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Numerous crystal structures of HIV gp120 have been reported, alone or with receptor CD4 and cognate antibodies; however, no sole gp120/CD4 complex without stabilization by an antibody is available. Here, we report a crystal structure of the gp120/CD4 complex without the aid of an antibody from HIV-1 CRF07_BC, a strain circulating in China. Interestingly, in addition to the canonical binding surface, a second interacting interface was identified. A mutagenesis study on critical residues revealed that the stability of this interface is important for the efficiency of Env-mediated membrane fusion. Furthermore, we found that a broad neutralizing antibody, ibalizumab, which targets CD4 in the absence of gp120, occupies the same binding surface as the second interface identified here on gp120. Therefore, we identified the possibility of the involvement of a second gp120-CD4 interaction interface during viral entry, and also provided a reasonable explanation for the broad activity of neutralizing antibody ibalizumab.
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A non-canonical binding interface in the crystal structure of HIV-1 gp120 core in complex with CD4.,Duan LW, Zhang H, Zhao MT, Sun JX, Chen WL, Lin JP, Liu XQ Sci Rep. 2017 Apr 21;7:46733. doi: 10.1038/srep46733. PMID:28429756<ref>PMID:28429756</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6l1y" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[CD4 3D structures|CD4 3D structures]]
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*[[Gp120 3D structures|Gp120 3D structures]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Human immunodeficiency virus 1]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Liu X]]
[[Category: Liu X]]
[[Category: Ning W]]
[[Category: Ning W]]

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structure of gp120/CD4 with a non-canonical surface

PDB ID 6l1y

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