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| <StructureSection load='5im5' size='340' side='right'caption='[[5im5]], [[Resolution|resolution]] 3.70Å' scene=''> | | <StructureSection load='5im5' size='340' side='right'caption='[[5im5]], [[Resolution|resolution]] 3.70Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5im5]] is a 30 chain structure with sequence from [http://en.wikipedia.org/wiki/Metja Metja] and [http://en.wikipedia.org/wiki/Vibbs Vibbs]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IM5 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5IM5 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5im5]] is a 30 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus jannaschii DSM 2661] and [https://en.wikipedia.org/wiki/Vibrionales_bacterium_SWAT-3 Vibrionales bacterium SWAT-3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IM5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IM5 FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ribC, MJ1184 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 METJA]), VSWAT3_13722 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=391574 VIBBS])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.699Å</td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Riboflavin_synthase Riboflavin synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.9 2.5.1.9] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5im5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5im5 OCA], [https://pdbe.org/5im5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5im5 RCSB], [https://www.ebi.ac.uk/pdbsum/5im5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5im5 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5im5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5im5 OCA], [http://pdbe.org/5im5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5im5 RCSB], [http://www.ebi.ac.uk/pdbsum/5im5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5im5 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/RISC_METJA RISC_METJA] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Metja]] | + | [[Category: Methanocaldococcus jannaschii DSM 2661]] |
- | [[Category: Riboflavin synthase]] | + | [[Category: Vibrionales bacterium SWAT-3]] |
- | [[Category: Vibbs]]
| + | [[Category: Baker D]] |
- | [[Category: Baker, D]] | + | [[Category: Bale JB]] |
- | [[Category: Bale, J B]] | + | [[Category: Cascio D]] |
- | [[Category: Cascio, D]] | + | [[Category: Collazo MJ]] |
- | [[Category: Collazo, M J]] | + | [[Category: King NP]] |
- | [[Category: King, N P]] | + | [[Category: Liu YA]] |
- | [[Category: Liu, Y A]] | + | [[Category: Sawaya MR]] |
- | [[Category: Sawaya, M R]] | + | [[Category: Sheffler W]] |
- | [[Category: Sheffler, W]] | + | [[Category: Thomas C]] |
- | [[Category: Thomas, C]] | + | [[Category: Yeates TO]] |
- | [[Category: Yeates, T O]] | + | |
- | [[Category: Co-assembling]]
| + | |
- | [[Category: Computational design]]
| + | |
- | [[Category: Designed protein cage]]
| + | |
- | [[Category: Icosahedron]]
| + | |
- | [[Category: Multimerization]]
| + | |
- | [[Category: Nanomaterial]]
| + | |
- | [[Category: Nanostructure]]
| + | |
- | [[Category: Protein binding]]
| + | |
- | [[Category: Protein engineering]]
| + | |
- | [[Category: Rosetta]]
| + | |
- | [[Category: Self-assembling]]
| + | |
- | [[Category: Symmetry]]
| + | |
- | [[Category: Two-component]]
| + | |
| Structural highlights
Function
RISC_METJA
Publication Abstract from PubMed
Nature provides many examples of self- and co-assembling protein-based molecular machines, including icosahedral protein cages that serve as scaffolds, enzymes, and compartments for essential biochemical reactions and icosahedral virus capsids, which encapsidate and protect viral genomes and mediate entry into host cells. Inspired by these natural materials, we report the computational design and experimental characterization of co-assembling, two-component, 120-subunit icosahedral protein nanostructures with molecular weights (1.8 to 2.8 megadaltons) and dimensions (24 to 40 nanometers in diameter) comparable to those of small viral capsids. Electron microscopy, small-angle x-ray scattering, and x-ray crystallography show that 10 designs spanning three distinct icosahedral architectures form materials closely matching the design models. In vitro assembly of icosahedral complexes from independently purified components occurs rapidly, at rates comparable to those of viral capsids, and enables controlled packaging of molecular cargo through charge complementarity. The ability to design megadalton-scale materials with atomic-level accuracy and controllable assembly opens the door to a new generation of genetically programmable protein-based molecular machines.
Accurate design of megadalton-scale two-component icosahedral protein complexes.,Bale JB, Gonen S, Liu Y, Sheffler W, Ellis D, Thomas C, Cascio D, Yeates TO, Gonen T, King NP, Baker D Science. 2016 Jul 22;353(6297):389-94. doi: 10.1126/science.aaf8818. PMID:27463675[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Bale JB, Gonen S, Liu Y, Sheffler W, Ellis D, Thomas C, Cascio D, Yeates TO, Gonen T, King NP, Baker D. Accurate design of megadalton-scale two-component icosahedral protein complexes. Science. 2016 Jul 22;353(6297):389-94. doi: 10.1126/science.aaf8818. PMID:27463675 doi:http://dx.doi.org/10.1126/science.aaf8818
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