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Amylase 3D structures

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Current revision (10:09, 7 September 2022) (edit) (undo)
 
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** [[3n8t]] – TkAAM – ''Thermococcus kodakarensis''<br />
** [[3n8t]] – TkAAM – ''Thermococcus kodakarensis''<br />
** [[3k8k]] – BtAAM – ''Bacterioides thetaiotaomicron''<br />
** [[3k8k]] – BtAAM – ''Bacterioides thetaiotaomicron''<br />
-
** [[3kwx]], [[2guy]] – AoAAM – ''Aspergilluys oryzae''<br />
+
** [[3kwx]], [[2guy]], [[6xsj]], [[6xsv]], [[7p4w]] – AoAAM – ''Aspergilluys oryzae''<br />
** [[2wpg]] – AAM – ''Xanthomonas campestris''<br />
** [[2wpg]] – AAM – ''Xanthomonas campestris''<br />
** [[2wc7]], [[2wcs]], [[2wkg]] – AAM catalytic region – ''Cyanobacterium''<br />
** [[2wc7]], [[2wcs]], [[2wkg]] – AAM catalytic region – ''Cyanobacterium''<br />
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** [[1wzk]], [[1wzl]], [[1wzm]], [[1izj]], [[1izk]], [[1jf5]], [[1jf6]] – TvAAM (mutant)
** [[1wzk]], [[1wzl]], [[1wzm]], [[1izj]], [[1izk]], [[1jf5]], [[1jf6]] – TvAAM (mutant)
** [[1mwo]], [[1mxd]] – PwAAM – ''Pyrococcus woesei''<br />
** [[1mwo]], [[1mxd]] – PwAAM – ''Pyrococcus woesei''<br />
-
** [[1ob0]], [[1bli]] - BlAAM (mutant) – ''Bacillus licheniformis''<br />
+
**[[6toy]] - BlAAM – ''Bacillus licheniformis''<br />
 +
** [[1ob0]], [[1bli]], [[6tp2]] - BlAAM (mutant) <br />
** [[1vjs]] – BlAAM precursor<br />
** [[1vjs]] – BlAAM precursor<br />
** [[1bpl]] – BlAAM<br />
** [[1bpl]] – BlAAM<br />
Line 48: Line 49:
**[[6sau]] – AAM – ''Cordyceps farinosa''<br />
**[[6sau]] – AAM – ''Cordyceps farinosa''<br />
**[[6sav]] – AAM – ''Rhizomucor pusillus''<br />
**[[6sav]] – AAM – ''Rhizomucor pusillus''<br />
 +
**[[6m4k]] – EfAAM – ''Eisenia fetida''<br />
 +
**[[6m4l]], [[6m4m]] – EfAAM (mutant) <br />
 +
**[[7jjt]] - AAM – ''Ruminococcus bromii''<br />
** ''AAM saccharide complexes''
** ''AAM saccharide complexes''
Line 87: Line 91:
*** [[3gly]], [[1agm]], [[1glm]] – AaAAM + saccharide<br />
*** [[3gly]], [[1agm]], [[1glm]] – AaAAM + saccharide<br />
*** [[5a2c]], [[5a2b]] - AnAAM + maltose <br />
*** [[5a2c]], [[5a2b]] - AnAAM + maltose <br />
-
**[[6gya]] - AAM + a-glucose + b-glucose - ''Alicyclosbacillus''<br />
+
*** [[6gya]] - AAM + a-glucose + b-glucose - ''Alicyclosbacillus''<br />
*** [[3n92]], [[3n98]] – TkAAM + saccharide<br />
*** [[3n92]], [[3n98]] – TkAAM + saccharide<br />
 +
*** [[6toz]], [[6tp0]], [[6tp1]] - BlAAM + saccharide<br />
** ''AAM other complexes''
** ''AAM other complexes''
Line 100: Line 105:
*Human pancreatic α-amylase
*Human pancreatic α-amylase
-
**[[3ij7]], [[1bsi]], [[1hny]], [[4x9y]], [[5u3a]] – hAAM – human<br />
+
**[[3ij7]], [[1bsi]], [[1hny]], [[4x9y]], [[5u3a]], [[6z8l]] – hAAM – human<br />
**[[1xgz]], [[1kb3]], [[1kbb]], [[1kbk]], [[1kgu]], [[1kgw]], [[1kgx]], 2cpu]] - hAAM (mutant) <br />
**[[1xgz]], [[1kb3]], [[1kbb]], [[1kbk]], [[1kgu]], [[1kgw]], [[1kgx]], 2cpu]] - hAAM (mutant) <br />
**[[3ij8]], [[3ij9]] – hAAM catalytic intermediate<br />
**[[3ij8]], [[3ij9]] – hAAM catalytic intermediate<br />
Line 125: Line 130:
**[[3blk]], [[3blp]], [[1z32]], [[1nm9]], [[1mfu]], [[1mfv]] - hAAM (mutant) + saccharide<br />
**[[3blk]], [[3blp]], [[1z32]], [[1nm9]], [[1mfu]], [[1mfv]] - hAAM (mutant) + saccharide<br />
**[[3dhp]] - hAAM (mutant) + acarbose<br />
**[[3dhp]] - hAAM (mutant) + acarbose<br />
- 
* Pullulanase α-amylase
* Pullulanase α-amylase
 +
** [[2wan]] – AAM – ''Bacillus acidopullululyticus''
** [[2wan]] – AAM – ''Bacillus acidopullululyticus''
** [[2fgz]] – KaAAM – ''Klebsiella aerogenes''
** [[2fgz]] – KaAAM – ''Klebsiella aerogenes''
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** ''Pullulanase α-amylase binary complexes''
** ''Pullulanase α-amylase binary complexes''
 +
*** [[2fh6]], [[2fh8]], [[2fhb]], [[2fhc]], [[2fhf]] - KaAAM + saccharide<br />
*** [[2fh6]], [[2fh8]], [[2fhb]], [[2fhc]], [[2fhf]] - KaAAM + saccharide<br />
*** [[3fax]] - AAM + saccharide – ''Streptococcus agalactiae''
*** [[3fax]] - AAM + saccharide – ''Streptococcus agalactiae''
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* Neopullulanase α-amylase
* Neopullulanase α-amylase
 +
** [[4aef]] – AAM – ''Pyrococcus furiosus''<br />
** [[4aef]] – AAM – ''Pyrococcus furiosus''<br />
** [[1j0h]] – BsAAM<br />
** [[1j0h]] – BsAAM<br />
Line 151: Line 158:
* β-amylase
* β-amylase
-
** [[2xfr]] – bBAM
+
 
-
** [[1wdp]] – sBAM – soybean
+
** [[2xfr]] – bBAM<br />
-
** [[2dqx]], [[1uko]], [[1ukp]] – sBAM (mutant)
+
** [[1wdp]] – sBAM – soybean<br />
 +
** [[2dqx]], [[1uko]], [[1ukp]] – sBAM (mutant)<br />
** [[1fa2]] - BAM + saccharide – Sweet potato<br />
** [[1fa2]] - BAM + saccharide – Sweet potato<br />
**[[6ger]] - BAM – wheat<br />
**[[6ger]] - BAM – wheat<br />
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** ''β-amylase binary complexes''
** ''β-amylase binary complexes''
 +
*** [[2xff]] – bBAM + acarbose<br />
*** [[2xff]] – bBAM + acarbose<br />
*** [[2xfy]], [[2xg9]], [[2xgb]], [[2xgi]] – bBAM + inhibitor<br />
*** [[2xfy]], [[2xg9]], [[2xgb]], [[2xgi]] – bBAM + inhibitor<br />
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*** [[1j0y]], [[1j0z]], [[1j10]], [[1j11]], [[1j12]], [[1j18]], [[1b9z]] - BcBAM + saccharide<br />
*** [[1j0y]], [[1j0z]], [[1j10]], [[1j11]], [[1j12]], [[1j18]], [[1b9z]] - BcBAM + saccharide<br />
*** [[1veo]], [[1vep]], [[1itc]] - BcBAM (mutant) + saccharide<br />
*** [[1veo]], [[1vep]], [[1itc]] - BcBAM (mutant) + saccharide<br />
-
**[[1fa2]], [[5wqu]] - SpBAM + saccharide <br />
+
*** [[1fa2]], [[5wqu]] - SpBAM + saccharide <br />
* γ-amylase
* γ-amylase
 +
** [[1lf6]] – TtGAM – ''Thermoanaerobacterium thermosaccharolyticum''
** [[1lf6]] – TtGAM – ''Thermoanaerobacterium thermosaccharolyticum''
** [[1lf9]] - TtGAM + acarbose<br />
** [[1lf9]] - TtGAM + acarbose<br />
* β/α-amylase
* β/α-amylase
 +
** [[2laa]], [[2lab]] – PpBAAM – ''Paenibacillus polymyxa'' - NMR<br />
** [[2laa]], [[2lab]] – PpBAAM – ''Paenibacillus polymyxa'' - NMR<br />
** [[3voc]] – PpBAAM<br />
** [[3voc]] – PpBAAM<br />
* Maltohexaose-producing amylase
* Maltohexaose-producing amylase
 +
** [[1wp6]] - BacMAM
** [[1wp6]] - BacMAM
**[[1wpc]] – BacMAM + saccharide<br />
**[[1wpc]] – BacMAM + saccharide<br />
* Maltogenic amylase
* Maltogenic amylase
 +
** [[1gvi]], [[1sma]] – MAM – ''Thermus sp.''
** [[1gvi]], [[1sma]] – MAM – ''Thermus sp.''
* Taka amylase
* Taka amylase
-
** [[2taa]], [[3vx0]], [[3vx1]] – AoTAM
+
 
-
** [[7taa]] – AoTAM + acarbose
+
** [[2taa]], [[3vx0]], [[3vx1]]< [[6yq7]] – AoTAM <br />
 +
** [[7taa]] – AoTAM + acarbose<br />
 +
** [[6yq9]], [[6yqa]], [[6yqb]], [[6yqc]] – AoTAM + inhibitor<br />
}}
}}
[[Category: Topic Page]]
[[Category: Topic Page]]

Current revision

3D structures of Amylase

Updated on 07-September-2022

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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