This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2rqo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:44, 15 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Solution structure of Polytheonamide B==
==Solution structure of Polytheonamide B==
-
<StructureSection load='2rqo' size='340' side='right'caption='[[2rqo]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='2rqo' size='340' side='right'caption='[[2rqo]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2rqo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Theonella_swinhoei Theonella swinhoei]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RQO OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2RQO FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2rqo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Theonella_sp. Theonella sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RQO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RQO FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=2TL:D-ALLOTHREONINE'>2TL</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=DHV:3-HYDROXY-D-VALINE'>DHV</scene>, <scene name='pdbligand=DSG:D-ASPARAGINE'>DSG</scene>, <scene name='pdbligand=DSN:D-SERINE'>DSN</scene>, <scene name='pdbligand=HTN:(3R)-3-HYDROXY-N-METHYL-D-ASPARAGINE'>HTN</scene>, <scene name='pdbligand=HVA:3-HYDROXY-L-VALINE'>HVA</scene>, <scene name='pdbligand=I2M:3-METHYL-L-ALLOISOLEUCINE'>I2M</scene>, <scene name='pdbligand=LMQ:(3S)-3-METHYL-L-GLUTAMINE'>LMQ</scene>, <scene name='pdbligand=M2S:3-{[(R)-METHYLSULFINYL]METHYL}-L-VALINE'>M2S</scene>, <scene name='pdbligand=MHE:5,5-DIMETHYL-2-OXOHEXANOIC+ACID'>MHE</scene>, <scene name='pdbligand=MND:N-METHYL-D-ASPARAGINE'>MND</scene>, <scene name='pdbligand=TBG:3-METHYL-L-VALINE'>TBG</scene>, <scene name='pdbligand=TDD:(2R)-2-AMINO-3,3-DIMETHYL-BUTANOIC+ACID'>TDD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2rqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rqo OCA], [http://pdbe.org/2rqo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2rqo RCSB], [http://www.ebi.ac.uk/pdbsum/2rqo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2rqo ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2TL:D-ALLOTHREONINE'>2TL</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=DHV:3-HYDROXY-D-VALINE'>DHV</scene>, <scene name='pdbligand=DSG:D-ASPARAGINE'>DSG</scene>, <scene name='pdbligand=DSN:D-SERINE'>DSN</scene>, <scene name='pdbligand=HTN:(3R)-3-HYDROXY-N-METHYL-D-ASPARAGINE'>HTN</scene>, <scene name='pdbligand=HVA:3-HYDROXY-L-VALINE'>HVA</scene>, <scene name='pdbligand=I2M:3-METHYL-L-ALLOISOLEUCINE'>I2M</scene>, <scene name='pdbligand=LMQ:(3S)-3-METHYL-L-GLUTAMINE'>LMQ</scene>, <scene name='pdbligand=M2S:3-{[(R)-METHYLSULFINYL]METHYL}-L-VALINE'>M2S</scene>, <scene name='pdbligand=MHE:5,5-DIMETHYL-2-OXOHEXANOIC+ACID'>MHE</scene>, <scene name='pdbligand=MND:N-METHYL-D-ASPARAGINE'>MND</scene>, <scene name='pdbligand=PRD_000224:Polytheonamide+B'>PRD_000224</scene>, <scene name='pdbligand=TBG:3-METHYL-L-VALINE'>TBG</scene>, <scene name='pdbligand=TDD:(2R)-2-AMINO-3,3-DIMETHYL-BUTANOIC+ACID'>TDD</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rqo OCA], [https://pdbe.org/2rqo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rqo RCSB], [https://www.ebi.ac.uk/pdbsum/2rqo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rqo ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 21: Line 22:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Theonella swinhoei]]
+
[[Category: Theonella sp]]
-
[[Category: Fujiwara, M]]
+
[[Category: Fujiwara M]]
-
[[Category: Fujjita, K]]
+
[[Category: Fujjita K]]
-
[[Category: Fusetani, N]]
+
[[Category: Fusetani N]]
-
[[Category: Guntert, P]]
+
[[Category: Guntert P]]
-
[[Category: Hamada, N]]
+
[[Category: Hamada N]]
-
[[Category: Hirota, H]]
+
[[Category: Hirota H]]
-
[[Category: Matsunaga, S]]
+
[[Category: Matsunaga S]]
-
[[Category: Schmucki, R]]
+
[[Category: Schmucki R]]
-
[[Category: Beta-helix]]
+
-
[[Category: Toxin]]
+

Current revision

Solution structure of Polytheonamide B

PDB ID 2rqo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools