Chitinase 3D structures

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Current revision (11:33, 27 January 2025) (edit) (undo)
 
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Line 8: Line 8:
**[[5hbf]] – hChi - human<br />
**[[5hbf]] – hChi - human<br />
**[[4wjx]], [[4wka]] – hChi catalytic domain<br />
**[[4wjx]], [[4wka]] – hChi catalytic domain<br />
 +
**[[6so0]] – hChi - NMR <br />
 +
**[[8fg5]], [[8fg7]] – mChi catalytic domain 1-391 - mouse
**[[4tx7]] – Chi – yard-long bean<br />
**[[4tx7]] – Chi – yard-long bean<br />
**[[3iwr]], [[2dkv]] – Chi residues 33-340 – Japanese rice<br />
**[[3iwr]], [[2dkv]] – Chi residues 33-340 – Japanese rice<br />
Line 19: Line 21:
**[[3n11]] – BcChi – ''Bacillus cereus''<br />
**[[3n11]] – BcChi – ''Bacillus cereus''<br />
**[[3g6l]] - BoChi residues 21-426 – ''Bionectria ochroleuca''<br />
**[[3g6l]] - BoChi residues 21-426 – ''Bionectria ochroleuca''<br />
-
**[[3oa5]], [[4dws]], [[4a5q]] – Chi – ''Yersinia entomophaga''<br />
+
**[[3oa5]], [[4dws]], [[4a5q]] – YeChi – ''Yersinia entomophaga''<br />
**[[4mpi]] – HbChi chitin-binding domain – ''Hevea brasiliensis''<br />
**[[4mpi]] – HbChi chitin-binding domain – ''Hevea brasiliensis''<br />
**[[4mst]] – HbChi catalytic domain <br />
**[[4mst]] – HbChi catalytic domain <br />
 +
**[[8hrf]], [[9iuh]] – Chi catalytic domain – ''Vibrio parahaemolyticus''<br />
 +
**[[6lnr]] – Chi – ''Simarouba glauca'' <br />
 +
**[[7z64]], [[7z65]] - Chi residues 21-298 – ''Chitinivibrio alkaliphilus''
 +
**[[8otb]], [[8ovr]] – CpChi – ''Clostridium perfringens''
 +
**[[8hne]], [[8hnf]] – syChi – synthetic
 +
**[[8x2v]], [[8x2w]] – syChi (mutant)
 +
**[[8xbd]] – Chi – uncultured bacterium<br />
*''Chitinase I binary complex''
*''Chitinase I binary complex''
**[[1waw]], [[1wb0]], [[4wk9]], [[4wkf]], [[4wkh]] – hChi catalytic domain + polypeptide – human<br />
**[[1waw]], [[1wb0]], [[4wk9]], [[4wkf]], [[4wkh]] – hChi catalytic domain + polypeptide – human<br />
-
**[[1hkk]], [[1hkm]], [[3rm4]], [[3rm8]], [[3rm9]], [[3rme]], [[5nrf]], [[5nra]], [[5nr8]] – hChi catalytic domain + inhibitor<br />
+
**[[1hkk]], [[1hkm]], [[3rm4]], [[3rm8]], [[3rm9]], [[3rme]], [[5nrf]], [[5nra]], [[5nr8]], [[6jjr]], [[6jk6]], [[6ze8]] – hChi catalytic domain + inhibitor<br />
 +
**[[8fr9]], [[8fra]], [[8frb]], [[8frc]], [[8frd]], [[8frg]], [[8gca]] – mChi catalytic domain 1-391 + chitobiose derivative
**[[3wl1]], [[3wqv]], [[3wqw]] – cbChi + GlcNAC - corn borer<br />
**[[3wl1]], [[3wqv]], [[3wqw]] – cbChi + GlcNAC - corn borer<br />
**[[3wl0]] – cbChi (mutant) + GlcNAC<br />
**[[3wl0]] – cbChi (mutant) + GlcNAC<br />
Line 40: Line 50:
**[[3wl1]], [[3wqv]], [[3wqw]] – cbChi + GlcNAC<br />
**[[3wl1]], [[3wqv]], [[3wqw]] – cbChi + GlcNAC<br />
**[[3wl0]] – cbChi (mutant) + GlcNAC<br />
**[[3wl0]] – cbChi (mutant) + GlcNAC<br />
 +
**[[8owf]] – CpChi + chitosan <br />
 +
**[[8oye]] – CpChi (mutant) + chitin <br />
 +
**[[8c6z]], [[8ose]] – CpChi + inhibitor<br />
*Chitinase II
*Chitinase II
Line 45: Line 58:
**[[5y29]] – cbChi catalytic domain 1 residues 1606-1992 <br />
**[[5y29]] – cbChi catalytic domain 1 residues 1606-1992 <br />
**[[5y2a]] – cbChi catalytic domain 2 residues 2056-2438<br />
**[[5y2a]] – cbChi catalytic domain 2 residues 2056-2438<br />
 +
**[[6jav]], [[6jaw]], [[6jax]], [[6jay]] – cbChi catalytic domain 1 + inhibitor <br />
**[[1dxj]] – Chi – Jack bean<br />
**[[1dxj]] – Chi – Jack bean<br />
**[[1e15]], [[3wd0]] - SmChi<br />
**[[1e15]], [[3wd0]] - SmChi<br />
**[[1ogb]], [[1goi]], [[1e6p]] - SmChi (mutant)<br />
**[[1ogb]], [[1goi]], [[1e6p]] - SmChi (mutant)<br />
-
**[[1kfw]] – Chi catalytic domain – Arthrobacter<br />
+
**[[1kfw]] – Chi catalytic domain – ''Arthrobacter''<br />
 +
**[[8hw6]] – HgChi – ''Heterodera glycines''
*''Chitinase II binary complex''
*''Chitinase II binary complex''
Line 58: Line 73:
**[[1ur8]], [[1gpf]], [[1e6r]], [[3wd1]], [[3wd2]], [[3wd3]], [[3wd4]] - SmChi + inhibitor<br />
**[[1ur8]], [[1gpf]], [[1e6r]], [[3wd1]], [[3wd2]], [[3wd3]], [[3wd4]] - SmChi + inhibitor<br />
**[[1e6z]] – SmChi + intermediate<br />
**[[1e6z]] – SmChi + intermediate<br />
 +
**[[8hw7]] - HgChi (mutant) + chitopentaose
 +
**[[8hw8]] - HgChi (mutant) + modulation factor
**[[2a3a]], [[2a3b]], [[2a3c]], [[2a3e]] – AfChi + inhibitor<br />
**[[2a3a]], [[2a3b]], [[2a3c]], [[2a3e]] – AfChi + inhibitor<br />
**[[1w1p]], [[1w1t]], [[1w1v]], [[1w1y]], [[1o6i]], [[1h0g]], [[1h0i]] – SmChi + polypeptide<br />
**[[1w1p]], [[1w1t]], [[1w1v]], [[1w1y]], [[1o6i]], [[1h0g]], [[1h0i]] – SmChi + polypeptide<br />
 +
**[[6ogd]] – YeChi + toxin subunits yena1+yena2 – Cryo EM<br />
*Chitinase III
*Chitinase III
Line 72: Line 90:
**[[5wvg]] – cbChi residues 528-987 (mutant) + GlcNAc<br />
**[[5wvg]] – cbChi residues 528-987 (mutant) + GlcNAc<br />
**[[4toq]] – Chi - pomegrenate<br />
**[[4toq]] – Chi - pomegrenate<br />
 +
**[[7xmh]] – rChi <br />
**[[2dbt]], [[1wvu]] – SgChi residues 30-294 – ''Streptomyces griseus''<br />
**[[2dbt]], [[1wvu]] – SgChi residues 30-294 – ''Streptomyces griseus''<br />
**[[1wvv]] - SgChi residues 30-294 (mutant)<br />
**[[1wvv]] - SgChi residues 30-294 (mutant)<br />
Line 111: Line 130:
**[[5df0]] – ApChiA + NAG + chitotriothiazoline<br />
**[[5df0]] – ApChiA + NAG + chitotriothiazoline<br />
**[[1edq]], [[1ctn]], [[5zl9]], [[5z7o]], [[5z7n]], [[5z7m]] - SmChiA – ''Serratia marcescens''<br />
**[[1edq]], [[1ctn]], [[5zl9]], [[5z7o]], [[5z7n]], [[5z7m]] - SmChiA – ''Serratia marcescens''<br />
-
**[[1x6l]], [[1rd6]] – SmChiA (mutant)<br />
+
**[[1x6l]], [[1rd6]], [[5z7p]] – SmChiA (mutant)<br />
-
**[[1x6n]] - SmChi (mutant) + inhibitor<br />
+
**[[1ffq]], [[2wk2]], [[2wly]], [[2wlz]], [[2wm0]] - SmChi + inhibitor<br />
**[[1ffq]], [[2wk2]], [[2wly]], [[2wlz]], [[2wm0]] - SmChi + inhibitor<br />
 +
**[[1x6n]] - SmChi (mutant) + inhibitor<br />
 +
**[[8w96]] - SmChi + polysaccharide
**[[1nh6]], [[1k9t]], [[1ffr]], [[1eib]], [[1ehn]] - SmChi (mutant) + polysaccharide<br />
**[[1nh6]], [[1k9t]], [[1ffr]], [[1eib]], [[1ehn]] - SmChi (mutant) + polysaccharide<br />
**[[4pxv]], [[5ylg]] – PrChiA LYSM domain – ''Pteris ryukuensis''<br />
**[[4pxv]], [[5ylg]] – PrChiA LYSM domain – ''Pteris ryukuensis''<br />
**[[4rl3]] – PrChiA catalytic domain <br />
**[[4rl3]] – PrChiA catalytic domain <br />
**[[3wh1]], [[3wij]] – BcChiA + GlcNAC – ''Bryum coronatum''<br />
**[[3wh1]], [[3wij]] – BcChiA + GlcNAC – ''Bryum coronatum''<br />
 +
**[[7f88]] – ChiA – ''Gemmabryum coronatum''<br />
**[[4ij4]] – BcChiA (mutant) + GlcNAC <br />
**[[4ij4]] – BcChiA (mutant) + GlcNAC <br />
 +
**[[6s2x]] – ChiA C-terminal domain – ''Legionella pneumophila''<br />
*Chitinase B
*Chitinase B
-
**[[4z2g]], [[4z2h]], [[4z2i]], [[4z2j]], [[4z2k]], [[4z2l]] – SmChiB + inhibitor<br />
+
**[[4z2g]], [[4z2h]], [[4z2i]], [[4z2j]], [[4z2k]], [[4z2l]], [[6jk9]], [[6jkf]], [[7c34]], [[7c92]], [[7cb1]], [[7fd6]] – SmChiB + inhibitor<br />
 +
**[[6igy]] – ChiB – ''Aspergillus niger''<br />
 +
**[[6xyz]] – ChiB – ''Flavobacterium johnsoniae''<br />
 +
**[[7okr]] – ChiB catalytic domain – ''Alilvibrio salmonicida''<br />
*Chitinase C
*Chitinase C
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**[[4j0l]] – RyChiC + GlcNAC<br />
**[[4j0l]] – RyChiC + GlcNAC<br />
**[[4axn]] – SmChiC<br />
**[[4axn]] – SmChiC<br />
 +
 +
* Chitinase D
 +
 +
**[[6hm1]] - ChiD – ''Serratia proteamaculans''<br />
* Chitinase H
* Chitinase H
-
**[[3w4r]], [[5gpr]] – cbChiH – corn borer<br />
+
**[[3w4r]], [[5gpr]] – cbChiH<br />
**[[3wkz]] – cbChiH (mutant)<br />
**[[3wkz]] – cbChiH (mutant)<br />
**[[5gqb]] – cbChiH + chitohepatose<br />
**[[5gqb]] – cbChiH + chitohepatose<br />
 +
**[[6jm7]], [[6jm8]] – OfChiH – ''Ostrinia furnacalis''<br />
 +
**[[6jmb]], [[6jmn]] – OfChiH + inhibitor <br />
 +
**[[7vrg]] – OfChiH + pesticide<br />
 +
 +
* Chitinase L or family 18 chitinase
 +
 +
**[[6kst]] – CsChiL – ''Chitiniphilis shinaninensis'' <br />
 +
**[[6kxm]], [[6kxn]] – CsChiL (mutant) <br />
*Other chitinases
*Other chitinases
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**[[1cns]] – Chi – barley<br />
**[[1cns]] – Chi – barley<br />
**[[3w3e]] – Chi – cowpea<br />
**[[3w3e]] – Chi – cowpea<br />
 +
**[[6kpl]] – cfChi – caterpillar fungus<br />
**[[2uy2]] – yChi residues 22-315 – yeast<br />
**[[2uy2]] – yChi residues 22-315 – yeast<br />
**[[1wno]], [[1w9p]] - AfChi<br />
**[[1wno]], [[1w9p]] - AfChi<br />
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**[[6idn]] – Chi – ''Ipomoea carnea''<br />
**[[6idn]] – Chi – ''Ipomoea carnea''<br />
**[[6bt9]] – Chi – ''Bacillus thuringesis''<br />
**[[6bt9]] – Chi – ''Bacillus thuringesis''<br />
-
**[[5yuq]], [[5xwq]], [[5xwf]] – Chi – ''Rhizomucor miehei''<br />
+
**[[5yuq]], [[7fbt]], [[5xwf]], [[7ftb]] – Chi – ''Rhizomucor miehei''<br />
 +
**[[6k7z]] – Chi – ''Pseudoalteromonas aurantia''<br />
 +
**[[7v91]] – FmChi catalytic domain – ''Ficus microcarpa''<br />
 +
**[[7v92]] – FmChi catalytic domain (mutant) <br />
*''Other chitinases binary complex''
*''Other chitinases binary complex''
Line 181: Line 222:
**[[3fy1]], [[2ybt]], [[2ybu]] - hChi catalytic domain + inhibitor<br />
**[[3fy1]], [[2ybt]], [[2ybu]] - hChi catalytic domain + inhibitor<br />
**[[1hki]], [[1hkj]] - hChi + inhibitor<br />
**[[1hki]], [[1hkj]] - hChi + inhibitor<br />
 +
**[[6kpm]] – cfChi + fucose<br />
 +
**[[6kpn]], [[6kpo]] – cfChi (mutant) + fucosyl-acetylglucosamine<br />
**[[2uy3]], [[2uy4]], [[2uy5]] - yChi residues 22-315 + inhibitor<br />
**[[2uy3]], [[2uy4]], [[2uy5]] - yChi residues 22-315 + inhibitor<br />
**[[2z38]] - BjChi catalytic domain + Cl<br />
**[[2z38]] - BjChi catalytic domain + Cl<br />
Line 192: Line 235:
**[[5xsx]], [[5xsw]] - TcChi residues 321-805 + substrate <br />
**[[5xsx]], [[5xsw]] - TcChi residues 321-805 + substrate <br />
**[[3a4w]], [[3a4x]] – PfChi catalytic domain (mutant) + NAG<br />
**[[3a4w]], [[3a4x]] – PfChi catalytic domain (mutant) + NAG<br />
 +
 +
*Endochitinase
 +
 +
**[[6ylj]], [[6yn4]], [[7akq]] – ThChi42 (mutant) – ''Trichoderma harzianum''<br />
 +
**[[7zya]] – ThChi33 <br />
 +
**[[7zy9]] – ThChi33 (mutant) <br />
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

3D Structures of Chitinase

Updated on 27-January-2025

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

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