Deaminase 3D structures

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Line 6: Line 6:
*Cytidine deaminase
*Cytidine deaminase
 +
**[[6l08]] – CDA1 – ''Arabidopsis thaliana''<BR />
**[[1r5t]] – yCDA - yeast <BR />
**[[1r5t]] – yCDA - yeast <BR />
**[[2a8n]] – AtCDA – ''Agrobacterium tumefaciens'' <BR />
**[[2a8n]] – AtCDA – ''Agrobacterium tumefaciens'' <BR />
Line 16: Line 17:
**[[3r2n]] – CDA – ''Mycobacterium leprae'' <BR />
**[[3r2n]] – CDA – ''Mycobacterium leprae'' <BR />
**[[4f3w]] – CDA – ''Mycobacterium marinum'' <BR />
**[[4f3w]] – CDA – ''Mycobacterium marinum'' <BR />
 +
**[[6kw6]] – CDA – ''Streptomyces noursei''<BR />
 +
**[[7zob]] – CDA – metagenome<BR />
*''Cytidine deaminase complex with nucleoside''
*''Cytidine deaminase complex with nucleoside''
Line 33: Line 36:
*Cytosine deaminase
*Cytosine deaminase
-
**[[1rb7]], [[1uaq]] – yCDDA <BR />
+
**[[1rb7]], [[1uaq]], [[8vlk]] – yCDDA <BR />
-
**[[1ysb]], [[1ysd]] – yCDDA (mutant)<BR />
+
**[[1ysb]], [[1ysd]], [[8i3n]], [[8vll]], [[8vlm]] – yCDDA (mutant)<BR />
**[[1k6w]] – EcCDDA <BR />
**[[1k6w]] – EcCDDA <BR />
**[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]] – EcCDDA (mutant)<BR />
**[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]] – EcCDDA (mutant)<BR />
 +
*''Cytosine deaminase complex''
*''Cytosine deaminase complex''
-
**[[1ox7]] – yCDDA + Zn <BR />
+
**[[1ox7]], [[8vlj]] – yCDDA + Zn <BR />
 +
**[[8i3o]] – yCDDA (mutant) + Mn<BR />
**[[1p6o]] – yCDDA + pyrimidine derivative<BR />
**[[1p6o]] – yCDDA + pyrimidine derivative<BR />
-
**[[2o3k]] – yCDDA (mutant) + pyrimidine derivative<BR />
+
**[[2o3k]], [[8i3p]] – yCDDA (mutant) + pyrimidine derivative<BR />
**[[3r0d]] – EcCDDA + Zn <BR />
**[[3r0d]] – EcCDDA + Zn <BR />
**[[3rn6]] – EcCDDA + Zn + iso-guanine<BR />
**[[3rn6]] – EcCDDA + Zn + iso-guanine<BR />
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**[[1rak]] – EcCDDA (mutant) + pyrimidine derivative<BR />
**[[1rak]] – EcCDDA (mutant) + pyrimidine derivative<BR />
**[[3o7u]] – EcCDDA + Zn + phosphono-cytosine<BR />
**[[3o7u]] – EcCDDA + Zn + phosphono-cytosine<BR />
-
**[[4r7w]], [[4r85]], [[4r88]] – KpCDDA + cytosine derivative – ''Klebsiella pneumoniae''<BR />
+
**[[6k63]] – KpCDDA + Zn – ''Klebsiella pneumoniae''<BR />
 +
**[[4r7w]], [[4r85]], [[4r88]] – KpCDDA + cytosine derivative<BR />
* Deoxycytidylate deaminase
* Deoxycytidylate deaminase
**[[2w4l]] – hDCMP<BR />
**[[2w4l]] – hDCMP<BR />
 +
**[[88vl]] – hDCMP + HIV VIF + CBF-beta + EloB + EloC + RNA – Cryo EM<BR />
 +
**[[7uu3]], [[7uu4]], [[7uu5]], [[8edj]] – rmDCMP + RNA – rhesus monkey<BR />
 +
**[[8tvc]], [[8tx4]] – rmDCMP + DNA <BR />
 +
**[[8e40]] – rmDCMP + HIV VIF + CBF-beta + RNA – Cryo EM<BR />
**[[5jfy]] – DCMP - cabbage<BR />
**[[5jfy]] – DCMP - cabbage<BR />
**[[2hvv]], [[2hvw]] – SmDCMP - ''Streptococcus mutans'' <BR />
**[[2hvv]], [[2hvw]] – SmDCMP - ''Streptococcus mutans'' <BR />
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**[[3e0l]] – hGDA<br />
**[[3e0l]] – hGDA<br />
 +
**[[6oh9]] – yGDA + Zn<br />
 +
**[[6ohb]], [[6ohc]] – EcGDA + Zn<br />
**[[1tiy]], [[1wkq]] – BsGDA <BR />
**[[1tiy]], [[1wkq]] – BsGDA <BR />
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**[[2i9u]] – GDA + guanine – ''Clostridium acetobutylicum'' <BR />
**[[2i9u]] – GDA + guanine – ''Clostridium acetobutylicum'' <BR />
**[[2ood]] – GDA + guanine – ''Bradrhizobium japonicum'' <BR />
**[[2ood]] – GDA + guanine – ''Bradrhizobium japonicum'' <BR />
-
**[[4lc5]], [[4lcn]], [[4hrq]] – NeGDA + guanine derivative<BR />
+
**[[4lc5]], [[4lcn]], [[4hrq]], [[7c3t]], [[7c3u]] – NeGDA + guanine derivative<BR />
**[[4hrw]] – NeGDA (mutant) + guanine derivative<BR />
**[[4hrw]] – NeGDA (mutant) + guanine derivative<BR />
**[[4lco]] – NeGDA + ameline<BR />
**[[4lco]] – NeGDA + ameline<BR />
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**[[4ld2]] – NeGDA + cytidine<BR />
**[[4ld2]] – NeGDA + cytidine<BR />
**[[4ld4]] – NeGDA + cytosine<BR />
**[[4ld4]] – NeGDA + cytosine<BR />
 +
 +
*Guanosine deaminase
 +
 +
**[[7dbf]] – AtGSDA + Zn<br />
 +
**[[7dc9]] – AtGSDA + Zn + GMP<br />
 +
**[[7dca]] – AtGSDA + Zn + xanthosine<br />
 +
**[[7dcb]] – AtGSDA + Zn + inosine<br />
 +
**[[7dm6]] – AtGSDA + Zn + crotonoside<br />
 +
**[[7dcw]] – AtGSDA + Zn + adeosine<br />
 +
**[[7dgc]], [[7dh1]], [[7dlc]], [[7dm5]], [[7dox]], [[7dow]], [[7doy]], [[7dpk]] – AtGSDA + Zn + guanosine derivative<br />
 +
**[[7dqn]], [[7w1q]] – AtGSDA (mutant) + Zn + guanosine derivative<br />
*Adenine deaminase
*Adenine deaminase
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**[[4r7t]] – VcGPD <br />
**[[4r7t]] – VcGPD <br />
**[[5hj5]] – VcGPD + fructose 6-phosphate + glucose-6-phosphate<BR />
**[[5hj5]] – VcGPD + fructose 6-phosphate + glucose-6-phosphate<BR />
 +
**[[7lqm]] – GPD – ''Pasteurelia multocida'' <BR />
 +
**[[7lqn]] – GPD –'' Haemophilus influenzae''<BR />
 +
**[[8eol]] – SdGPD – ''Shewanella denitrificans''<BR />
 +
**[[8eym]] – SdGPD + glucosamine-6-phosphate derivatives<BR />
 +
*1-aminocyclopropane-1-carboxylate (ACC) deaminase
*1-aminocyclopropane-1-carboxylate (ACC) deaminase
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**[[3iau]] – THD + PLP derivative – tomato<BR />
**[[3iau]] – THD + PLP derivative – tomato<BR />
**[[1tdj]] – EcTHD + PLP <BR />
**[[1tdj]] – EcTHD + PLP <BR />
 +
**[[8zkv]] – EcTHD (mutant) + PLP <BR />
 +
**[[9jfi]] – EcTHD + PLP derivative <BR />
**[[2gn0]], [[2gn1]] – StTHD + PLP derivative – ''Salmonella typhimurium''<BR />
**[[2gn0]], [[2gn1]] – StTHD + PLP derivative – ''Salmonella typhimurium''<BR />
**[[2gn2]] – StTHD + PLP derivative + CMP<BR />
**[[2gn2]] – StTHD + PLP derivative + CMP<BR />
**[[1ve5]] – THD + PLP – ''Thermus thermophilus''<BR />
**[[1ve5]] – THD + PLP – ''Thermus thermophilus''<BR />
 +
**[[8y1j]] – THD + PLP derivative – ''Pseudomonas aeruginosa''<BR />
*L-serine deaminase
*L-serine deaminase
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*2-aminomuconate deaminase
*2-aminomuconate deaminase
-
**[[6izh]] – PsAMD – <BR />
+
**[[6izh]] – PsAMD <BR />
 +
 
 +
*Aminofutalosine deaminase
 +
 
 +
**[[7lkj]] – HpAMD – ''Helicobacter pylori''<BR />
 +
**[[7lkk]] – HpAMD + inhibitor<BR />
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

3D Structures of deaminase

Updated on 14-May-2025


Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Jaime Prilusky

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