Dehalogenase 3D structures

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Current revision (09:29, 31 March 2025) (edit) (undo)
 
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Line 8: Line 8:
**[[6a41]] – RbHLD – ''Rhodobacteraceae'' <br />
**[[6a41]] – RbHLD – ''Rhodobacteraceae'' <br />
**[[4c6h]] – RbHLD + hexanol <br />
**[[4c6h]] – RbHLD + hexanol <br />
-
**[[1bn6]], [[1bn7]], [[4kaf]], [[4kaa]], [[4kac]] – RrHLD – ''Rhodococcus rhodochrous''<br />
 
-
**[[5y2x]] – RrHLD (mutant) <br />
 
-
**[[4e46]] – RrHLD + propanol <br />
 
**[[3u1t]] – HLD DmmA – marine <br />
**[[3u1t]] – HLD DmmA – marine <br />
**[[2had]], [[1ede]], [[2pky]], [[2yxp]], [[1edb]] – XaHLD – ''Xanthobacter autotrophicus'' <br />
**[[2had]], [[1ede]], [[2pky]], [[2yxp]], [[1edb]] – XaHLD – ''Xanthobacter autotrophicus'' <br />
**[[1be0]], [[1bee]], [[1hde]], [[1bez]] – XaHLD (mutant) <br />
**[[1be0]], [[1bee]], [[1hde]], [[1bez]] – XaHLD (mutant) <br />
**[[3wi7]] – AtHLD DatA – ''Agrobacterium tumefaciens''<br />
**[[3wi7]] – AtHLD DatA – ''Agrobacterium tumefaciens''<br />
-
**[[3wib]] – AtHLD DatA (mutant) <br />
+
**[[3wib]], [[9ldq]] – AtHLD DatA (mutant) <br />
**[[2xt0]] – HLD DppA – ''Plesiocystis pacifica'' <br />
**[[2xt0]] – HLD DppA – ''Plesiocystis pacifica'' <br />
 +
**[[8b5k]], [[8b5o]] – HLD – ''Mycobacterium marinum''<br />
 +
**[[6ty7]], [[7pw1]], [[8oe2]], [[8oe6]] – HLD – synthetic<br />
*Haloalkane dehalogenase from ''Rhodococcus rhodochrous'' DhaA
*Haloalkane dehalogenase from ''Rhodococcus rhodochrous'' DhaA
-
**[[5flk]], [[2v9z]] – RrHLD DhaA (mutant) <br />
+
**[[1bn6]], [[1bn7]], [[4kaf]], [[4kaa]], [[4kac]], [[8b6n]], [[8b6o]], [[8b6p]] – RrHLD – ''Rhodococcus rhodochrous''<br />
-
**[[4hzg]] – RrHLD DhaA + Cl<br />
+
**[[2v9z]], [[5flk]], [[5y2x]], [[6sp5]], [[6xtc]], [[7o3o]], [[7o8b]] – RrHLD (mutant) <br />
-
**[[3rk4]], [[3fbw]], [[3fwh]], [[3g9x]], [[3sk0]], [[4wcv]] – RrHLD DhaA (mutant) + Cl<br />
+
**[[8b6q]] – RrHLD/calmodulin<br />
 +
**[[8b6s]], [[8b6t]] – RrHLD/GFP<br />
 +
**[[7zbd]], [[7ziw]], [[8b6r]], [[8sw8]], [[9jha]] – RrHLD + substrate <br />
 +
**[[7zba]], [[7zbb]] – RrHLD + ligand <br />
 +
**[[4e46]] – RrHLD + propanol <br />
 +
**[[6zcc]], [[7ond]], [[7oo4]] – RrHLD + flurophore<br />
**[[4fwb]] – RrHLD DhaA (mutant) + trichloropropane<br />
**[[4fwb]] – RrHLD DhaA (mutant) + trichloropropane<br />
 +
**[[7pcw]], [[7pcx]] – RrHLD DhaA (mutant) + chloroalkane derivative<br />
 +
**[[7wam]], [[7wan]] – RrHLD DhaA (mutant) + quinoline derivative<br />
 +
**[[6y7a]], [[6zvv]], [[6zvu]], [[6zvw]], [[6zvy]], [[7ziv]], [[7zix]], [[7ziy]], [[7ziz]], [[7zj0]] – RrHLD + rhodamine derivative<br />
 +
**[[8j1o]] – RrHLD + triazole derivative<br />
*Haloalkane dehalogenase from ''Sphingomonas paucimobolis'' LinB
*Haloalkane dehalogenase from ''Sphingomonas paucimobolis'' LinB
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**[[1g42]] – SpHLD LinB + trichloropropane<br />
**[[1g42]] – SpHLD LinB + trichloropropane<br />
**[[1g5f]] – SpHLD LinB + trichloroethane<br />
**[[1g5f]] – SpHLD LinB + trichloroethane<br />
 +
**[[7nfz]] – HLD LinB (mutant) – ''Sphingomonas japonicum''<br />
*Haloalkane dehalogenase complex with halogen
*Haloalkane dehalogenase complex with halogen
Line 49: Line 58:
**[[1b6g]] – XaHLD + Cl <br />
**[[1b6g]] – XaHLD + Cl <br />
**[[1cij]] – XaHLD + Br <br />
**[[1cij]] – XaHLD + Br <br />
 +
**[[4hzg]], [[5uy1]] – RrHLD + Cl<br />
 +
**[[3rk4]], [[3fbw]], [[3fwh]], [[3g9x]], [[3sk0]], [[4f5z]], [[4wcv]], [[6xt8]] – RrHLD (mutant) + Cl<br />
**[[1cqw]] – RrHLD + I<br />
**[[1cqw]] – RrHLD + I<br />
-
**[[5uxz]], [[5y2y]], [[5vnp]] – RrHLD + Cl + fluorogenic ligand<br />
+
**[[5uxz]], [[5y2y]], [[5vnp]], [[6y7b]] – RrHLD + Cl + fluorogenic ligand<br />
-
**[[5uy1]] – RrHLD + Cl<br />
+
-
**[[4f5z]] – RrHLD (mutant) + Cl<br />
+
**[[4f60]] – RrHLD (mutant) + F<br />
**[[4f60]] – RrHLD (mutant) + F<br />
**[[4brz]] – RbHLD + Cl <br />
**[[4brz]] – RbHLD + Cl <br />
-
**[[4k2a]] – BeHLD DbeA + Cl – ''Bradyrhizobium elkanii''<br />
+
**[[4k2a]], [[6xy9]] – BeHLD DbeA + Cl – ''Bradyrhizobium elkanii''<br />
**[[6s42]] – BeHLD (mutant) + Cl + I<br />
**[[6s42]] – BeHLD (mutant) + Cl + I<br />
**[[3a2m]], [[3a2n]], [[3afi]] – BjHLD DbjA + Cl – ''Bradyrhizobium japonicum''<br />
**[[3a2m]], [[3a2n]], [[3afi]] – BjHLD DbjA + Cl – ''Bradyrhizobium japonicum''<br />
 +
**[[6s06]] – HLD (mutant) + Cl – ''Sphingobium japonicum''<br />
**[[3a2l]] – BjHLD DbjA (mutant) + Cl <br />
**[[3a2l]] – BjHLD DbjA (mutant) + Cl <br />
**[[5esr]] – HLD DccA + Cl – ''Caulobacter crescentus''<br />
**[[5esr]] – HLD DccA + Cl – ''Caulobacter crescentus''<br />
**[[6f9o]] – HLD + Cl – ''Psychrobacter cryohalolentis''<br />
**[[6f9o]] – HLD + Cl – ''Psychrobacter cryohalolentis''<br />
 +
**[[7avr]] – HLD DpaA + Cl – ''Paraglaciecola agarilytica''<br />
*Fluoroacetate dehalogenase (FDH)
*Fluoroacetate dehalogenase (FDH)
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**[[3r3u]], [[5nyv]], [[5k3d]], [[5k3c]], [[6gxh]], [[6gxl]], [[6muh]], [[6muy]], [[6mzz]], [[6n00]], [[6fsx]], [[5o2i]], [[5o2g]] – RpFDH – ''Rhodopseudomonas palustris''<br />
**[[3r3u]], [[5nyv]], [[5k3d]], [[5k3c]], [[6gxh]], [[6gxl]], [[6muh]], [[6muy]], [[6mzz]], [[6n00]], [[6fsx]], [[5o2i]], [[5o2g]] – RpFDH – ''Rhodopseudomonas palustris''<br />
**[[3r40]], [[3r41]], [[5t4t]], [[5k3f]], [[5k3e]] – RpFDH (mutant) <br />
**[[3r40]], [[3r41]], [[5t4t]], [[5k3f]], [[5k3e]] – RpFDH (mutant) <br />
 +
**[[8sdc]] – DaFDH – ''Dechloromonas aromatica''<br />
 +
**[[8sdd]] – DaFDH (mutant) <br />
*''Fluoroacetate dehalogenase complexes''
*''Fluoroacetate dehalogenase complexes''
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*Halohydrin dehalogenase (HHDH)
*Halohydrin dehalogenase (HHDH)
-
**[[1zmo]] – HHDH – ''Anthrobacter''<br />
+
**[[1zmo]] – HHDH – ''Athrobacter''<br />
 +
**[[8oxf]] – ArtFDH (mutant) <br />
**[[3zn2]] – AtHHDH <br />
**[[3zn2]] – AtHHDH <br />
 +
**[[7wkq]] – HHDH – ''Acidimicrobila bacterium'' <br />
*''Halohydrin dehalogenase complexes''
*''Halohydrin dehalogenase complexes''
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**[[5kwe]] – RrHHDH (mutant) + Cl<br />
**[[5kwe]] – RrHHDH (mutant) + Cl<br />
**[[5kvc]] – RrHHDH (mutant) + imidazole + Cl<br />
**[[5kvc]] – RrHHDH (mutant) + imidazole + Cl<br />
 +
**[[8xxb]] – HHDH (mutant) + Cl – ''Thauera aminoaromatica''<br />
-
*L-2-haloacid dehalogenase (LHDH)
+
*L-2-haloacid dehalogenase (LHDH) or (S)-2-haloacid dehalogenase
**[[1jud]] – PsLHDH – ''Pseudomonas''<br />
**[[1jud]] – PsLHDH – ''Pseudomonas''<br />
 +
**[[8yvw]] – PsLHDH (mutant)<br />
**[[2w43]] – StLHDH – ''Sulfolobus tokodaii''<br />
**[[2w43]] – StLHDH – ''Sulfolobus tokodaii''<br />
**[[2yml]], [[2ymm]], [[2ymp]], [[2ymq]] – RhLHDH <br />
**[[2yml]], [[2ymm]], [[2ymp]], [[2ymq]] – RhLHDH <br />
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**[[3um9]] – LHDH – ''Polaromonas'' <br />
**[[3um9]] – LHDH – ''Polaromonas'' <br />
**[[3umg]] – LHDH – ''Rhodococcus jostii'' <br />
**[[3umg]] – LHDH – ''Rhodococcus jostii'' <br />
 +
**[[2no4]] – BcLHDH IVA – ''Burkholderia cepacia''<br />
 +
**[[7arp]], [[7qnm]] – ZgLHDH – ''Zobellia galactanivorans''<br />
 +
**[[7asz]] – ZgLHDH (mutant)<br />
 +
**[[8hp5]], [[8hp6]], [[8hp7]] – LHDH (mutant) - ''Novosphingobium''<br />
 +
**[[8wbr]] – KlLHDH – Klebsiella<br />
 +
**[[8wbs]] – KlLHDH (mutant)<br />
*''L-2-haloacid dehalogenase complexes''
*''L-2-haloacid dehalogenase complexes''
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**[[1qq6]], [[1qq7]] – XaLHDH + aspartate carboxymethyl ester + Cl<br />
**[[1qq6]], [[1qq7]] – XaLHDH + aspartate carboxymethyl ester + Cl<br />
**[[2yn4]] – RhLHDH + chlorobutyrate<br />
**[[2yn4]] – RhLHDH + chlorobutyrate<br />
 +
**[[2no5]] – BcLHDH IVA + 2-monochloroprapanate<br />
*R-2-haloacid dehalogenase (RHDH)
*R-2-haloacid dehalogenase (RHDH)
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**[[4n2x]] – MeDLHDH – ''Methylobacterium''<br />
**[[4n2x]] – MeDLHDH – ''Methylobacterium''<br />
**[[3wj8]] – MeDLHDH + bromo-methylpropionate <br />
**[[3wj8]] – MeDLHDH + bromo-methylpropionate <br />
- 
-
* S-2-haloacid dehalogenase (SHDH)
 
- 
-
**[[2no4]] – BcSHDH IVA – ''Burkholderia cepacia''<br />
 
-
**[[2no5]] – BcSHDH IVA + 2-monochloroprapanate<br />
 
*Iodotyrosine dehalogenase (ITDH)
*Iodotyrosine dehalogenase (ITDH)
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**[[5yak]] – hITDH 1 (mutant) + FMN + fluorotyrosine <br />
**[[5yak]] – hITDH 1 (mutant) + FMN + fluorotyrosine <br />
-
*cis-3-chloroacrylic acid dehalogenase (CaaD)
+
*cis-3-chloroacrylic acid dehalogenase (CaaD) or oxalocrotonate tautomerase
-
**[[2flz]], [[3mf8]] – CbCaaD – ''Coryneform bacterium''<br />
+
**[[2flz]], [[3mf8]], [[7ms0]] – CbCaaD – ''Coryneform bacterium''<br />
**[[3mf7]] – CbCaaD + oxirane-carboxylate <br />
**[[3mf7]] – CbCaaD + oxirane-carboxylate <br />
**[[2flt]] – CbCaaD + lactic acid<br />
**[[2flt]] – CbCaaD + lactic acid<br />
 +
**[[7ms1]], [[7ms8]], [[7ms9]] – CbCaaD (mutant) + intermediate<br />
*trans-3-chloroacrylic acid dehalogenase (TaaD)
*trans-3-chloroacrylic acid dehalogenase (TaaD)
Line 178: Line 198:
**[[5obi]], [[5obp]] – SmTCRD catalytic subunit + cofactor<br />
**[[5obi]], [[5obp]] – SmTCRD catalytic subunit + cofactor<br />
**[[4ur2]] – SmTCRD catalytic subunit + iodide<br />
**[[4ur2]] – SmTCRD catalytic subunit + iodide<br />
-
 
+
**[[8q4h]] – TCRD + cobalamin + menaquinone – ''Desulfitobacterium hafniense''<br />
}}
}}
 +
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

3D structures of dehalogenase

Updated on 31-March-2025

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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