This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6vhy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:13, 11 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6vhy' size='340' side='right'caption='[[6vhy]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
<StructureSection load='6vhy' size='340' side='right'caption='[[6vhy]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6vhy]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_oxytocus_perniciosus"_flugge_1886 "bacillus oxytocus perniciosus" flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VHY OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6VHY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6vhy]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_oxytoca Klebsiella oxytoca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VHY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6VHY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=QXD:5-deoxy-5-({[(2R)-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-2-(3-hydroxyphenyl)ethyl]sulfonyl}amino)adenosine'>QXD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AGF18_11090 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=571 "Bacillus oxytocus perniciosus" Flugge 1886])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=QXD:5-deoxy-5-({[(2R)-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-2-(3-hydroxyphenyl)ethyl]sulfonyl}amino)adenosine'>QXD</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6vhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vhy OCA], [http://pdbe.org/6vhy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6vhy RCSB], [http://www.ebi.ac.uk/pdbsum/6vhy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6vhy ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vhy OCA], [https://pdbe.org/6vhy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vhy RCSB], [https://www.ebi.ac.uk/pdbsum/6vhy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vhy ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 21: Line 21:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus oxytocus perniciosus flugge 1886]]
+
[[Category: Klebsiella oxytoca]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Gulick, A M]]
+
[[Category: Gulick AM]]
-
[[Category: Kreitler, D F]]
+
[[Category: Kreitler DF]]
-
[[Category: Adenylation]]
+
-
[[Category: Biosynthetic protein]]
+
-
[[Category: Nonribosomal peptide synthetase]]
+
-
[[Category: Nrp]]
+
-
[[Category: Tilimycin]]
+
-
[[Category: Tilivalline]]
+

Current revision

NpsA-ThdA, an artificially fused Adenylation-PCP di-domain NRPS from Klebsiella oxytoca

PDB ID 6vhy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools