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| <StructureSection load='2xqo' size='340' side='right'caption='[[2xqo]], [[Resolution|resolution]] 1.40Å' scene=''> | | <StructureSection load='2xqo' size='340' side='right'caption='[[2xqo]], [[Resolution|resolution]] 1.40Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2xqo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"ruminiclostridium_thermocellum"_yutin_and_galperin_2013 "ruminiclostridium thermocellum" yutin and galperin 2013]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XQO OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2XQO FirstGlance]. <br> | + | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XQO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XQO FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CTR:CELLOTRIOSE'>CTR</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PRD_900021:beta-cellotriose'>PRD_900021</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2xqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xqo OCA], [http://pdbe.org/2xqo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xqo RCSB], [http://www.ebi.ac.uk/pdbsum/2xqo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xqo ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xqo OCA], [https://pdbe.org/2xqo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xqo RCSB], [https://www.ebi.ac.uk/pdbsum/2xqo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xqo ProSAT]</span></td></tr> |
| </table> | | </table> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Ruminiclostridium thermocellum yutin and galperin 2013]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Bayer, E A]] | + | [[Category: Bayer EA]] |
- | [[Category: Bras, J L.A]] | + | [[Category: Bras JLA]] |
- | [[Category: Cartmell, A]] | + | [[Category: Cartmell A]] |
- | [[Category: Carvalho, A L]] | + | [[Category: Carvalho AL]] |
- | [[Category: Correia, M A.S]] | + | [[Category: Correia MAS]] |
- | [[Category: Fontes, C M.G A]] | + | [[Category: Fontes CMGA]] |
- | [[Category: Gilbert, H J]] | + | [[Category: Gilbert HJ]] |
- | [[Category: Prates, J A.M]] | + | [[Category: Prates JAM]] |
- | [[Category: Romao, M J]] | + | [[Category: Romao MJ]] |
- | [[Category: Vazana, Y]] | + | [[Category: Vazana Y]] |
- | [[Category: Verze, G]] | + | [[Category: Verze G]] |
- | [[Category: Hydrolase]]
| + | |
| Structural highlights
Publication Abstract from PubMed
Clostridium thermocellum is a well-characterized cellulose-degrading microorganism. The genome sequence of C. thermocellum encodes a number of proteins that contain type I dockerin domains, which implies that they are components of the cellulose-degrading apparatus, but display no significant sequence similarity to known plant cell wall-degrading enzymes. Here, we report the biochemical properties and crystal structure of one of these proteins, designated CtCel124. The protein was shown to be an endo-acting cellulase that displays a single displacement mechanism and acts in synergy with Cel48S, the major cellulosomal exo-cellulase. The crystal structure of CtCel124 in complex with two cellotriose molecules, determined to 1.5 A, displays a superhelical fold in which a constellation of alpha-helices encircle a central helix that houses the catalytic apparatus. The catalytic acid, Glu96, is located at the C-terminus of the central helix, but there is no candidate catalytic base. The substrate-binding cleft can be divided into two discrete topographical domains in which the bound cellotriose molecules display twisted and linear conformations, respectively, suggesting that the enzyme may target the interface between crystalline and disordered regions of cellulose.
Structural insights into a unique cellulase fold and mechanism of cellulose hydrolysis.,Bras JL, Cartmell A, Carvalho AL, Verze G, Bayer EA, Vazana Y, Correia MA, Prates JA, Ratnaparkhe S, Boraston AB, Romao MJ, Fontes CM, Gilbert HJ Proc Natl Acad Sci U S A. 2011 Mar 29;108(13):5237-42. Epub 2011 Mar 10. PMID:21393568[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Bras JL, Cartmell A, Carvalho AL, Verze G, Bayer EA, Vazana Y, Correia MA, Prates JA, Ratnaparkhe S, Boraston AB, Romao MJ, Fontes CM, Gilbert HJ. Structural insights into a unique cellulase fold and mechanism of cellulose hydrolysis. Proc Natl Acad Sci U S A. 2011 Mar 29;108(13):5237-42. Epub 2011 Mar 10. PMID:21393568 doi:10.1073/pnas.1015006108
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