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| <StructureSection load='2yoc' size='340' side='right'caption='[[2yoc]], [[Resolution|resolution]] 2.88Å' scene=''> | | <StructureSection load='2yoc' size='340' side='right'caption='[[2yoc]], [[Resolution|resolution]] 2.88Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2yoc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_oxytocus_perniciosus"_flugge_1886 "bacillus oxytocus perniciosus" flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YOC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2YOC FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2yoc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_oxytoca Klebsiella oxytoca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YOC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YOC FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.88Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pullulanase Pullulanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.41 3.2.1.41] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yoc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yoc OCA], [https://pdbe.org/2yoc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yoc RCSB], [https://www.ebi.ac.uk/pdbsum/2yoc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yoc ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2yoc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yoc OCA], [http://pdbe.org/2yoc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yoc RCSB], [http://www.ebi.ac.uk/pdbsum/2yoc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yoc ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/PULA_KLEPN PULA_KLEPN] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Bacillus oxytocus perniciosus flugge 1886]] | + | [[Category: Klebsiella oxytoca]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Pullulanase]]
| + | [[Category: Alzari PM]] |
- | [[Category: Alzari, P M]] | + | [[Category: Bernarde C]] |
- | [[Category: Bernarde, C]] | + | [[Category: Buschiazzo A]] |
- | [[Category: Buschiazzo, A]] | + | [[Category: Francetic O]] |
- | [[Category: Francetic, O]] | + | [[Category: Mechaly AE]] |
- | [[Category: Mechaly, A E]] | + | [[Category: Nadeau N]] |
- | [[Category: Nadeau, N]] | + | [[Category: Pugsley AP]] |
- | [[Category: Pugsley, A P]] | + | [[Category: Tello-Manigne D]] |
- | [[Category: Tello-Manigne, D]] | + | |
- | [[Category: Glycosyl hydrolase]]
| + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Type 2 secretion system]]
| + | |
| Structural highlights
Function
PULA_KLEPN
Publication Abstract from PubMed
The Klebsiella lipoprotein pullulanase (PulA) is exported to the periplasm, triacylated, and anchored via lipids in the inner membrane (IM) prior to its transport to the bacterial surface through a type II secretion system (T2SS). X-Ray crystallography and atomistic molecular dynamics (MD) simulations of PulA in a 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine (POPE) model membrane provided an unprecedented molecular view of an N-terminal unstructured tether and the IM lipoprotein retention signal, and revealed novel interactions with the IM via N-terminal immunoglobulin-like domains in PulA. An efficiently secreted nonacylated variant (PulANA) showed similar peripheral membrane association during MD simulations, consistent with the binding of purified PulANA to liposomes. Remarkably, combined X-ray, MD, and functional studies identified a novel subdomain, Ins, inserted in the alpha-amylase domain, which is required for PulA secretion. Available data support a model in which PulA binding to the IM promotes interactions with the T2SS, possibly via the Ins subdomain.
Structural Basis of Pullulanase Membrane Binding and Secretion Revealed by X-Ray Crystallography, Molecular Dynamics and Biochemical Analysis.,East A, Mechaly AE, Huysmans GH, Bernarde C, Tello-Manigne D, Nadeau N, Pugsley AP, Buschiazzo A, Alzari PM, Bond PJ, Francetic O Structure. 2016 Jan 5;24(1):92-104. doi: 10.1016/j.str.2015.10.023. Epub 2015 Dec, 10. PMID:26688215[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ East A, Mechaly AE, Huysmans GH, Bernarde C, Tello-Manigne D, Nadeau N, Pugsley AP, Buschiazzo A, Alzari PM, Bond PJ, Francetic O. Structural Basis of Pullulanase Membrane Binding and Secretion Revealed by X-Ray Crystallography, Molecular Dynamics and Biochemical Analysis. Structure. 2016 Jan 5;24(1):92-104. doi: 10.1016/j.str.2015.10.023. Epub 2015 Dec, 10. PMID:26688215 doi:http://dx.doi.org/10.1016/j.str.2015.10.023
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