From Proteopedia
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| | ==Your Heading Here (maybe something like 'Structure')== | | ==Your Heading Here (maybe something like 'Structure')== |
| - | <StructureSection load='' size='380' side='right' caption='Morph showing the transition of SARS-CoV-2 spike protein from its closed to open conformation induced by proteolytic cleavage by furin, see [[http://proteopedia.org/wiki/index.php/SARS-CoV-2_protein_S_activation_by_furin Details of this morph]]' scene='85/857125/Morph_alpha_carbons_only/4'>
| + | Left: Karsten/Eric Morph |
| | + | Middle: Proteopedia Morph |
| | + | Right: PyMol Morph |
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| - | Left side Proteopedia Morph (10 linear steps, no alignment, C-alpha atoms)
| + | <Structure load='' size='270' frame='true' align='Left' caption='Karsten/Eric Morph' scene='85/857125/Morph_alpha_carbons_only/4' /> |
| - | <br> | + | |
| - | Right side Karsten/Eric Morph: 6ZGG (an open conformation) was aligned with 6ZGI (a closed conformation) using the Iterative Magic Fit of Swiss-PDB-Viewer. This aligned 1,828 alpha carbons (mainly the core of the structure, regions S???) with RMSD 1.34 Å. The closed model was morphed (linear interpolation) to the open model using the server provided by Karsten Theis, requesting 8 intermediate frames. The resulting 10-frame PDB file was loaded into the Jmol Java application. The alpha carbons were selected ("select *.ca") and written into a separate file, which was uploaded to Proteopedia for use in the above morph scenes: Image:Morf-6zgi-to-6zgg-alpha-carbons-only.pdb.
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| - | <Structure load='' size='350' frame='true' align='right' caption='Insert caption here' scene='85/857154/6zgi_to_6zgg/4' /> | + | <Structure load='' size='270' frame='true' align='Left' caption='Proteopedia Morph' scene='85/857154/Proteopedia_morph/1' /> |
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| - | <scene name='85/857154/6zgi_to_6zgg/4'>Proteopedia 10 step Linear Morph</scene> | + | <Structure load='' size='270' frame='true' align='Left' caption='PyMol Morph' scene='85/857154/6zgi_to_6zgg/4' /> |
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| - | </StructureSection>
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| - | == References ==
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| - | <references/>
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Current revision
Your Heading Here (maybe something like 'Structure')
Left: Karsten/Eric Morph
Middle: Proteopedia Morph
Right: PyMol Morph
