This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Glucanase 3D structures

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:06, 13 March 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 10: Line 10:
**[[6imv]] - TfEndo-Gase + sophorose <br />
**[[6imv]] - TfEndo-Gase + sophorose <br />
**[[6imw]] - TfEndo-Gase (mutant) + 1,2–β-glucan <br />
**[[6imw]] - TfEndo-Gase (mutant) + 1,2–β-glucan <br />
 +
**[[5z06]] - Endo-Gase – ''Parabacterioides distasonis''<br />
*Endo-1,3-β-glucanase
*Endo-1,3-β-glucanase
 +
**[[3ur7]], [[3ur8]] - pEndo-Gase – potato<br />
 +
**[[6jms]] - Endo-Gase – cedar<br />
**[[6ub2]] - muEndo-Gase – mushroom<br />
**[[6ub2]] - muEndo-Gase – mushroom<br />
**[[3atg]] - Endo-Gase – ''Cellulosimicrobium cellulans''<br />
**[[3atg]] - Endo-Gase – ''Cellulosimicrobium cellulans''<br />
Line 23: Line 26:
**[[4dfs]] - Endo-Gase catalytic domain – ''Thermotoga petrophila''<br />
**[[4dfs]] - Endo-Gase catalytic domain – ''Thermotoga petrophila''<br />
**[[2cl2]] - PcEndo-Gase – ''Phanerochaete chrysosporium''<br />
**[[2cl2]] - PcEndo-Gase – ''Phanerochaete chrysosporium''<br />
-
**[[3ur7]], [[3ur8]] - pEndo-Gase – potato<br />
 
**[[4bow]], [[4crq]] - ZgEndo-Gase catalytic domain (mutant) – ''Zobellia galactanivorans''<br />
**[[4bow]], [[4crq]] - ZgEndo-Gase catalytic domain (mutant) – ''Zobellia galactanivorans''<br />
**[[4bq1]] - ZgEndo-Gase catalytic domain <br />
**[[4bq1]] - ZgEndo-Gase catalytic domain <br />
**[[5fui]] - ZgEndo-Gase C terminal <br />
**[[5fui]] - ZgEndo-Gase C terminal <br />
 +
**[[7r3t]] - BcEndo-Gase C terminal <br />
**[[4pq9]] - Endo-Gase – ''Mycobacterium marinum'' <br />
**[[4pq9]] - Endo-Gase – ''Mycobacterium marinum'' <br />
**[[5h9x]], [[6a6c]] - PbEndo-Gase – ''Paenibacillus barengoltzii'' <br />
**[[5h9x]], [[6a6c]] - PbEndo-Gase – ''Paenibacillus barengoltzii'' <br />
**[[4wzf]] - MtEndo-Gase – ''Mycobacterium tuberculosis''<br />
**[[4wzf]] - MtEndo-Gase – ''Mycobacterium tuberculosis''<br />
-
**[[5m5z]], [[5m60]] - Endo-Gase – ''Chaetomium thermophilum''<br />
+
**[[5m5z]], [[5m60]] - ChtEndo-Gase – ''Chaetomium thermophilum''<br />
**[[5h4e]] - Endo-Gase – ''Clodytidium beijerinckii''<br />
**[[5h4e]] - Endo-Gase – ''Clodytidium beijerinckii''<br />
 +
**[[6uaq]] - AmEndo-Gase – ''Amycolatopsis mediterranei'' <br />
 +
**[[6ufz]] - AmEndo-Gase (mutant) <br />
 +
**[[6uax]] - Endo-Gase – ''Sorangium cellulosum''<br />
*''Endo-1,3– β-glucanase binary complex''
*''Endo-1,3– β-glucanase binary complex''
Line 37: Line 43:
**[[6ub3]], [[6ub4]], [[6ub5]], [[6ub6]] - muEndo-Gase + polysaccharide <br />
**[[6ub3]], [[6ub4]], [[6ub5]], [[6ub6]] - muEndo-Gase + polysaccharide <br />
**[[4gzi]], [[4gzj]] - pEndo-Gase (mutant) + glucose<br />
**[[4gzi]], [[4gzj]] - pEndo-Gase (mutant) + glucose<br />
-
**[[4bpz]], [[4cte]] - ZgEndo-Gase catalytic domain (mutant) + trisasccharide<br />
+
**[[4bpz]], [[4cte]], [[6gl0]] - ZgEndo-Gase catalytic domain (mutant) + trisasccharide<br />
**[[5h9y]] - PbEndo-Gase + laminarihexaose <br />
**[[5h9y]] - PbEndo-Gase + laminarihexaose <br />
 +
**[[5xcy]], [[5xcz]] - PcEndo-Gase + cellobiose <br />
**[[5xbz]], [[5xc2]] - RmEndo-Gase + laminaripentaose <br />
**[[5xbz]], [[5xc2]] - RmEndo-Gase + laminaripentaose <br />
 +
**[[6xqf]], [[6xqg]], [[6xql]], [[6xqm]] - ubEndo-Gase + polysaccharide – uncultured bacteria<br />
 +
**[[6xqh]] - ubEndo-Gase (mutant) + polysaccharide <br />
 +
**[[6uar]] - AmEndo-Gase + polysaccharide - ''Amycolatopsis mediterranei''<br />
 +
**[[6ufl]], [[6uas]], [[6uat]], [[6uau]] - AmEndo-Gase (mutant) + polysaccharide <br />
*Endo-1,4-β-glucanase
*Endo-1,4-β-glucanase
-
**[[3pzu]], [[3pzv]] – BsEndo-Gase catalytic domain – ''Bacillus subtilis''<br />
+
**[[3pzu]], [[3pzv]], [[6ufv]], [[6ufw]] – BsEndo-Gase catalytic domain 27-332 – ''Bacillus subtilis''<br />
-
**[[2l8a]] - BsEndo-Gase CRM3 domain<br />
+
**[[7cju]] - BsEndo-Gase catalytic domain (mutant)<br />
 +
**[[2l8a]] - BsEndo-Gase CRM3 domain 354-499<br />
**[[3ndy]] - CcEndo-Gase D catalytic and cellulose-binding domains – ''Clostridium cellulovorans''<br />
**[[3ndy]] - CcEndo-Gase D catalytic and cellulose-binding domains – ''Clostridium cellulovorans''<br />
**[[1j83]] - CcEndo-Gase ENGF <br />
**[[1j83]] - CcEndo-Gase ENGF <br />
**[[3ik2]] - Endo-Gase A residues 34-541 – ''Clostridium acetobulylicum''<br />
**[[3ik2]] - Endo-Gase A residues 34-541 – ''Clostridium acetobulylicum''<br />
 +
**[[6q1i]] - Endo-Gase A – ''Clostridium longisporum''<br />
**[[2xfg]], [[5byw]] - CtEndo-Gase 1 catalytic and cellulose-binding domains – ''Clostridium thermocellum''<br />
**[[2xfg]], [[5byw]] - CtEndo-Gase 1 catalytic and cellulose-binding domains – ''Clostridium thermocellum''<br />
**[[1cem]], [[2e0p]], [[1is9]] - CtEndo-Gase A catalytic domain<br />
**[[1cem]], [[2e0p]], [[1is9]] - CtEndo-Gase A catalytic domain<br />
Line 94: Line 107:
**[[3wc3]] - Endo-Gase – ''Eisenia fetida''<br />
**[[3wc3]] - Endo-Gase – ''Eisenia fetida''<br />
**[[4lx4]] - PsEndo-Gase – ''Pseudomonas stutzeri''<br />
**[[4lx4]] - PsEndo-Gase – ''Pseudomonas stutzeri''<br />
-
**[[3fw6]], [[3ii1]], [[4ee9]], [[4m24]] - ubEndo-Gase – uncultured bacterium<br />
+
**[[3fw6]], [[3ii1]], [[4ee9]], [[4m24]] - ubEndo-Gase <br />
**[[4nf7]] - Endo-Gase – ''Butyrivibrio proteoclasticus''<br />
**[[4nf7]] - Endo-Gase – ''Butyrivibrio proteoclasticus''<br />
**[[4q2b]] - Endo-Gase – ''Pseudomonas putida'' <br />
**[[4q2b]] - Endo-Gase – ''Pseudomonas putida'' <br />
Line 105: Line 118:
**[[5cd2]] - Endo-Gase – ''Vibrio fischeri'' <br />
**[[5cd2]] - Endo-Gase – ''Vibrio fischeri'' <br />
**[[5xbu]] - AcEndo-Gase – ''Ampullaria crossean''<br />
**[[5xbu]] - AcEndo-Gase – ''Ampullaria crossean''<br />
 +
**[[7t7y]], [[7t7z]] - Endo-Gase – ''Dictyostelium discoideum''<br />
 +
**[[5hos]] - XaEndo-Gase – ''Xanthomonas axonopodis''<br />
 +
**[[5hnn]] - XaEndo-Gase (mutant) <br />
 +
**[[1wzz]] - Endo-Gase – ''Komagataeibacher xylinus''<br />
 +
**[[8e1w]] - Endo-Gase – ''Panus similis''<br />
*''Endo-1,4–β-glucanase binary complex''
*''Endo-1,4–β-glucanase binary complex''
Line 123: Line 141:
**[[3amm]] - TmEndo-Gase + polysaccharide<br />
**[[3amm]] - TmEndo-Gase + polysaccharide<br />
**[[3amn]], [[3amp]], [[3amq]] - TmEndo-Gase (mutant) + polysaccharide<br />
**[[3amn]], [[3amp]], [[3amq]] - TmEndo-Gase (mutant) + polysaccharide<br />
 +
**[[7ec9]] - TmEndo-Gase + jiromycin derivative<br />
**[[2bod]], [[2bof]], [[2bog]] - TfEndo-Gase E2 catalytic domain + polysaccharide<br />
**[[2bod]], [[2bof]], [[2bog]] - TfEndo-Gase E2 catalytic domain + polysaccharide<br />
**[[3tf4]], [[4tf4]] - TfEndo-Gase E4 catalytic domain + polysaccharide<br />
**[[3tf4]], [[4tf4]] - TfEndo-Gase E4 catalytic domain + polysaccharide<br />
Line 142: Line 161:
**[[5i79]] - AnEndo-Gase (mutant) + polysaccharide<br />
**[[5i79]] - AnEndo-Gase (mutant) + polysaccharide<br />
**[[5xc4]], [[5xc8]], [[5xc9]], [[5xbx]] - AcEndo-Gase + cellobiose <br />
**[[5xc4]], [[5xc8]], [[5xc9]], [[5xbx]] - AcEndo-Gase + cellobiose <br />
 +
**[[5xca]] - AcEndo-Gase (mutant) + cellobiose <br />
 +
**[[5ljf]] - ubEndo-Gase (mutant) + polysaccharide <br />
**[[4doe]] - CbEndo-Gase GH9 module + ligand<br />
**[[4doe]] - CbEndo-Gase GH9 module + ligand<br />
**[[6r2j]] - PsEndo-Gase + cellobiose <br />
**[[6r2j]] - PsEndo-Gase + cellobiose <br />
 +
 +
*Endo-1,6-β-glucanase
 +
 +
**[[5ngk]], [[5ngl]] – BtEndo-Gase – ''Bacterioides thetaiotamicron''<br />
*Endo-1,3-1,4-β-glucanase
*Endo-1,3-1,4-β-glucanase
Line 161: Line 186:
**[[4x0v]] - CbEndo-Gase GH5 module <br />
**[[4x0v]] - CbEndo-Gase GH5 module <br />
**[[5h4r]] - CbEndo-Gase GH5 module (mutant) + cellotetraose<br />
**[[5h4r]] - CbEndo-Gase GH5 module (mutant) + cellotetraose<br />
 +
**[[7ee2]] – ChtEndo-Gase <br />
 +
**[[7eee]], [[7eej]] – ChtEndo-Gase + polysaccharide <br />
*''Endo-1,3-1,4–β-glucanase binary complex''
*''Endo-1,3-1,4–β-glucanase binary complex''
Line 209: Line 236:
**[[4xeb]] - Endo-Gase – ''Penicillium funiculosum'' <br />
**[[4xeb]] - Endo-Gase – ''Penicillium funiculosum'' <br />
**[[4tuf]] - Endo-Gase – ''Xanthomonas campestris'' <br />
**[[4tuf]] - Endo-Gase – ''Xanthomonas campestris'' <br />
-
**[[5jx5]], [[6idw]] - Endo-Gase – ''Orpinomyces''<br />
+
**[[5jx5]], [[6idw]], [[6idw]] - Endo-Gase – ''Orpinomyces''<br />
**[[6rwf]] - HjEndo-Gase <br />
**[[6rwf]] - HjEndo-Gase <br />
 +
**[[6su8]] - Endo-Gase – ''Rasamsonia emersonii''<br />
 +
**[[6mvj]] - Endo-Gase V – ''Neurospora crassi''<br />
 +
**[[7f81]] - EntEndo-Gase – ''Enterobacter''<br />
*''Non-specific endo-glucanase binary complex''
*''Non-specific endo-glucanase binary complex''
Line 229: Line 259:
**[[3ays]] - PrEndo-Gase (mutant) + polysaccharide<br />
**[[3ays]] - PrEndo-Gase (mutant) + polysaccharide<br />
**[[3oea]], [[3oeb]] - Endo-Gase (mutant) + polysaccharide – ''Caldanaerobius polysaccharolyticus''<br />
**[[3oea]], [[3oeb]] - Endo-Gase (mutant) + polysaccharide – ''Caldanaerobius polysaccharolyticus''<br />
-
**[[3nco]] - FnEndo-Gase + peptide<br />
+
**[[3nco]] - FnEnd''Italic text''o-Gase + peptide<br />
**[[4afd]] - Endo-Gase Cel5a N terminal + polysaccharide<br />
**[[4afd]] - Endo-Gase Cel5a N terminal + polysaccharide<br />
**[[5dzg]], [[5dze]], [[5dzf]] - Endo-Gase (mutant) + polysaccharide – grape<br />
**[[5dzg]], [[5dze]], [[5dzf]] - Endo-Gase (mutant) + polysaccharide – grape<br />
 +
**[[6zz3]] - ubEndo-Gase (mutant) + polysaccharide <br />
 +
**[[6ujf]] - Endo-Gase + glucose – ''Clostridioides difficile''<br />
 +
**[[6wqv]] - Endo-Gase + polysaccharide – ''Ruminococcus champanellensis''<br />
 +
**[[7f82]] - EntEndo-Gase + polysaccharide <br />
*Exo-1,3-β-glucanase
*Exo-1,3-β-glucanase
-
**[[3o6a]], [[4m80]] - CaExo-Gase (mutant) – ''Candida albicans''<br />
 
-
**[[1eqp]], [[1cz1]] - CaExo-Gase<br />
 
**[[1ex1]] - bExo-Gase<br />
**[[1ex1]] - bExo-Gase<br />
-
**[[1h4p]] - Exo-Gase – yeast
+
**[[1h4p]] - Exo-Gase – yeast<br />
 +
**[[2pbo]], [[2pf0]], [[3o6a]], [[4m80]] - CaExo-Gase (mutant) – ''Candida albicans''<br />
 +
**[[1eqp]], [[1cz1]] - CaExo-Gase<br />
 +
**[[2pb1]], [[2pc8]] - CaExo-Gase + polysaccharide <br />
 +
**[[6zb9]] - miExo-Gase - microbiome<br />
 +
**[[6zb8]] - miExo-Gase (mutant) <br />
 +
**[[6ub7]] - Exo-Gase – Cryptococcus neoformans<br />
 +
**[[6uay]] - BgExo-Gase – Blastomyces gilchristi<br />
 +
**[[6ub8]] - AnExo-Gase – Aureobasidium namibiae<br />
 +
**[[6zb9]] - miExo-Gase - microbiome<br />
 +
**[[6zb8]] - miExo-Gase (mutant) <br />
*''Exo-1,3-β-glucanase binary complex''
*''Exo-1,3-β-glucanase binary complex''
Line 245: Line 287:
**[[3n9k]]– CaExo-Gase (mutant) + polysaccharide<br />
**[[3n9k]]– CaExo-Gase (mutant) + polysaccharide<br />
**[[4m81]], [[4m82]] - CaExo-Gase (mutant) + glucopyranoside<br />
**[[4m81]], [[4m82]] - CaExo-Gase (mutant) + glucopyranoside<br />
 +
**[[6uaz]], [[6ub0]], [[6ub1]] - Exo-Gase + polysaccharide – ''Blastomyces gilchristi''<br />
 +
**[[6uba]], [[6ubb]] - Exo-Gase + polysaccharide – ''Aureobasidium namibiae''<br />
*Exo-1,4-β-glucanase
*Exo-1,4-β-glucanase
Line 275: Line 319:
**[[4le3]] – PaBGase – ''Podospora anserina''<br />
**[[4le3]] – PaBGase – ''Podospora anserina''<br />
**[[4le4]] – PaBGase + cellotriose<br />
**[[4le4]] – PaBGase + cellotriose<br />
 +
**[[6uav]], [[6uaw]] – BGase + laminaritriose – ''Pseudomonas viridiflava''<br />
 +
**[[7vtk]] – SpBGase – ''Streptomyces pratensis''<br />
 +
**[[7vtl]], [[7vtm]] – SpBGase + polysaccharide <br />
 +
**[[7ww4]] – PeBGase – ''Pedobacter''<br />
 +
**[[7wwc]] – PeBGase + laminaritriose <br />
 +
**[[7quz]], [[7r1n]] – BcBGase C terminal<br />
 +
**[[7eo3]] – BGase – ''Actinobacteria bacterium''<br />
*α-1,3-glucanase (AGase)
*α-1,3-glucanase (AGase)
Line 286: Line 337:
* β-glucanase
* β-glucanase
-
**[[6euf]], [[6euj]] – BtBGase – ''Bacterioides thetaiotamicron''<br />
+
**[[6euf]], [[6euj]] – BtBGase <br />
**[[6eug]] – BtBGase + galactoimidazole<br />
**[[6eug]] – BtBGase + galactoimidazole<br />
**[[6euh]] – BtBGase + jirimycin derivative<br />
**[[6euh]] – BtBGase + jirimycin derivative<br />
**[[6eui]] – BtBGase + galactose<br />
**[[6eui]] – BtBGase + galactose<br />
**[[3wvj]] – CtBGase <br />
**[[3wvj]] – CtBGase <br />
 +
**[[5a8m]] – SdBGase – ''Saccharophagus degradans''<br />
 +
**[[5a8o]], [[5a94]], [[5a95]] – SdBGase + polysaccharide <br />
*Xyloglucanase
*Xyloglucanase
Line 301: Line 354:
**[[2jep]] - PpXGase – ''Paenibacillus pabuli'' <br />
**[[2jep]] - PpXGase – ''Paenibacillus pabuli'' <br />
**[[3a0f]] - XGase – ''Geotrichum''<br />
**[[3a0f]] - XGase – ''Geotrichum''<br />
-
**[[4w84]] - ubXGase <br />
+
**[[4w84]], [[4w8a]], [[4w8b]] - ubXGase <br />
**[[5fkt]] - XGase – ''Cellvibrio japonicus''<br />
**[[5fkt]] - XGase – ''Cellvibrio japonicus''<br />

Current revision

3D structures of glucanase

Updated on 13-March-2023

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

Retrieved from "http://52.214.119.220/wiki/index.php/Glucanase_3D_structures"
Personal tools