This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6qo6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:05, 24 January 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6qo6' size='340' side='right'caption='[[6qo6]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
<StructureSection load='6qo6' size='340' side='right'caption='[[6qo6]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6qo6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"mycobacterium_abcessus"_moore_and_frerichs_1953 "mycobacterium abcessus" moore and frerichs 1953]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QO6 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6QO6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6qo6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacteroides_abscessus Mycobacteroides abscessus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QO6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6QO6 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5OB:5-METHOXYBENZIMIDAZOLE'>5OB</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.745&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6nvr|6nvr]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5OB:5-METHOXYBENZIMIDAZOLE'>5OB</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">trmD, MAB_3226c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=36809 "Mycobacterium abcessus" Moore and Frerichs 1953])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6qo6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qo6 OCA], [https://pdbe.org/6qo6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6qo6 RCSB], [https://www.ebi.ac.uk/pdbsum/6qo6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6qo6 ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/tRNA_(guanine(37)-N(1))-methyltransferase tRNA (guanine(37)-N(1))-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.228 2.1.1.228] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6qo6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qo6 OCA], [http://pdbe.org/6qo6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qo6 RCSB], [http://www.ebi.ac.uk/pdbsum/6qo6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qo6 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/B1MDI3_MYCA9 B1MDI3_MYCA9]] Specifically methylates guanosine-37 in various tRNAs.[HAMAP-Rule:MF_00605][RuleBase:RU003464][SAAS:SAAS00040552]
+
[https://www.uniprot.org/uniprot/B1MDI3_MYCA9 B1MDI3_MYCA9] Specifically methylates guanosine-37 in various tRNAs.[HAMAP-Rule:MF_00605][RuleBase:RU003464][SAAS:SAAS00040552]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 28: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Mycobacterium abcessus moore and frerichs 1953]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Abell, C]]
+
[[Category: Mycobacteroides abscessus]]
-
[[Category: Blundell, T L]]
+
[[Category: Abell C]]
-
[[Category: Coyne, A G]]
+
[[Category: Blundell TL]]
-
[[Category: Mendes, V]]
+
[[Category: Coyne AG]]
-
[[Category: Thomas, S E]]
+
[[Category: Mendes V]]
-
[[Category: Whitehouse, A J]]
+
[[Category: Thomas SE]]
-
[[Category: Spout methyltransferase]]
+
[[Category: Whitehouse AJ]]
-
[[Category: Transferase]]
+
-
[[Category: Trmd]]
+
-
[[Category: Trna methyltransferase]]
+

Current revision

Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with Fragment 4 (5-Methoxybenzimidazole)

PDB ID 6qo6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools