This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6y1z

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:00, 14 September 2022) (edit) (undo)
 
Line 3: Line 3:
<SX load='6y1z' size='340' side='right' viewer='molstar' caption='[[6y1z]], [[Resolution|resolution]] 2.82&Aring;' scene=''>
<SX load='6y1z' size='340' side='right' viewer='molstar' caption='[[6y1z]], [[Resolution|resolution]] 2.82&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6y1z]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y1Z OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Y1Z FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6y1z]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Y1Z FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=HIS:HISTIDINE'>HIS</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=O7B:(3~{a}~{S})-2-[(3~{S})-1-azabicyclo[2.2.2]octan-3-yl]-3~{a},4,5,6-tetrahydro-3~{H}-benzo[de]isoquinolin-1-one'>O7B</scene>, <scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=HIS:HISTIDINE'>HIS</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=O7B:(3~{a}~{S})-2-[(3~{S})-1-azabicyclo[2.2.2]octan-3-yl]-3~{a},4,5,6-tetrahydro-3~{H}-benzo[de]isoquinolin-1-one'>O7B</scene>, <scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Htr3a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6y1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y1z OCA], [https://pdbe.org/6y1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6y1z RCSB], [https://www.ebi.ac.uk/pdbsum/6y1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6y1z ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6y1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y1z OCA], [http://pdbe.org/6y1z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6y1z RCSB], [http://www.ebi.ac.uk/pdbsum/6y1z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6y1z ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[[https://www.uniprot.org/uniprot/5HT3A_MOUSE 5HT3A_MOUSE]] This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. This receptor is a ligand-gated ion channel, which when activated causes fast, depolarizing responses in neurons. It is a cation-specific, but otherwise relatively nonselective, ion channel.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 17: Line 18:
</div>
</div>
<div class="pdbe-citations 6y1z" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6y1z" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[5-hydroxytryptamine receptor 3D structures|5-hydroxytryptamine receptor 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 22: Line 26:
</SX>
</SX>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Lk3 transgenic mice]]
+
[[Category: Mus musculus]]
-
[[Category: Nury, H]]
+
[[Category: Nury H]]
-
[[Category: Perot, J]]
+
[[Category: Perot J]]
-
[[Category: Zarkadas, E]]
+
[[Category: Zarkadas E]]
-
[[Category: Antiemetic]]
+
-
[[Category: Pentameric ligand-gated ion channel]]
+
-
[[Category: Receptor]]
+
-
[[Category: Transport protein]]
+

Current revision

Mouse serotonin 5HT3 receptor in complex with palonosetron

6y1z, resolution 2.82Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools