|
|
Line 3: |
Line 3: |
| <StructureSection load='5lm3' size='340' side='right'caption='[[5lm3]], [[Resolution|resolution]] 2.50Å' scene=''> | | <StructureSection load='5lm3' size='340' side='right'caption='[[5lm3]], [[Resolution|resolution]] 2.50Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5lm3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Plaf7 Plaf7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LM3 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5LM3 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5lm3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum_3D7 Plasmodium falciparum 3D7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LM3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LM3 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=APC:DIPHOSPHOMETHYLPHOSPHONIC+ACID+ADENOSYL+ESTER'>APC</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PF3D7_1327600 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=36329 PLAF7])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=APC:DIPHOSPHOMETHYLPHOSPHONIC+ACID+ADENOSYL+ESTER'>APC</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nicotinate-nucleotide_adenylyltransferase Nicotinate-nucleotide adenylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.18 2.7.7.18] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lm3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lm3 OCA], [https://pdbe.org/5lm3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lm3 RCSB], [https://www.ebi.ac.uk/pdbsum/5lm3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lm3 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5lm3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lm3 OCA], [http://pdbe.org/5lm3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lm3 RCSB], [http://www.ebi.ac.uk/pdbsum/5lm3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lm3 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q8IE38_PLAF7 Q8IE38_PLAF7] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 23: |
Line 24: |
| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Nicotinate-nucleotide adenylyltransferase]] | + | [[Category: Plasmodium falciparum 3D7]] |
- | [[Category: Plaf7]]
| + | [[Category: Bathke J]] |
- | [[Category: Bathke, J]] | + | [[Category: Becker K]] |
- | [[Category: Becker, K]] | + | [[Category: Brandstaether C]] |
- | [[Category: Brandstaether, C]] | + | [[Category: Burkhardt A]] |
- | [[Category: Burkhardt, A]] | + | [[Category: Fritz-Wolf K]] |
- | [[Category: Fritz-Wolf, K]] | + | [[Category: Rahlfs S]] |
- | [[Category: Rahlfs, S]] | + | |
- | [[Category: Drug target]]
| + | |
- | [[Category: Malaria]]
| + | |
- | [[Category: Nad metabolism]]
| + | |
- | [[Category: Namnat]]
| + | |
- | [[Category: Nicotinic acid mononucleotide adenylyltransferase]]
| + | |
- | [[Category: Plasmodium falciparum]]
| + | |
- | [[Category: Protein crystallography]]
| + | |
- | [[Category: Transferase]]
| + | |
| Structural highlights
Function
Q8IE38_PLAF7
Publication Abstract from PubMed
Nicotinic acid mononucleotide adenylyltransferase (NaMNAT) is an indispensable enzyme for the synthesis of NAD and NADP. It catalyzes the adenylylation of nicotinic acid mononucleotide (NaMN) to yield nicotinic acid adenine dinucleotide (NaAD). Since NAD(H) and NADP(H) are essentially involved in metabolic and redox regulatory reactions, NaMNAT is an attractive drug target in the fight against bacterial and parasitic infections. Notably, NaMNAT of the malaria parasite Plasmodium falciparum possesses only 20% sequence identity with the homologous human enzyme. Here we present, for the first time, two X-ray structures of PfNaMNAT - in the product-bound state with NaAD and complexed with an alpha,beta-non-hydrolizable ATP analog, the structures were determined to a resolution of 2.2A and 2.5A, respectively. The overall architecture of PfNaMNAT was found to be more similar to its bacterial homologs than to its human counterparts although the PPHK motif conserved in bacteria is missing. Furthermore, PfNaMNAT possesses two cysteine residues within the active site that have not been described for any other NaMNATase so far and are likely to be involved in redox regulation of PfNaMNAT activity. Enzymatic studies and surface plasmon resonance data reveal that PfNaMNAT is capable of utilizing NaMN and NMN (nicotinamide mononucleotide) with a slight preference for NaMN. Surprisingly, a comparison with the active site of E. coli NaMNAT showed very similar architectures, despite different substrate preferences.
Structural and functional characterization of Plasmodium falciparum nicotinic acid mononucleotide adenylyltransferase.,Bathke J, Fritz-Wolf K, Brandstadter C, Burkhardt A, Jortzik E, Rahlfs S, Becker K J Mol Biol. 2016 Oct 27. pii: S0022-2836(16)30449-1. doi:, 10.1016/j.jmb.2016.10.023. PMID:27984041[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Bathke J, Fritz-Wolf K, Brandstadter C, Burkhardt A, Jortzik E, Rahlfs S, Becker K. Structural and functional characterization of Plasmodium falciparum nicotinic acid mononucleotide adenylyltransferase. J Mol Biol. 2016 Oct 27. pii: S0022-2836(16)30449-1. doi:, 10.1016/j.jmb.2016.10.023. PMID:27984041 doi:http://dx.doi.org/10.1016/j.jmb.2016.10.023
|