3dy5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:54, 30 August 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3dy5' size='340' side='right'caption='[[3dy5]], [[Resolution|resolution]] 3.51&Aring;' scene=''>
<StructureSection load='3dy5' size='340' side='right'caption='[[3dy5]], [[Resolution|resolution]] 3.51&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dy5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Black_sea_rod Black sea rod]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DY5 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3DY5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3dy5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Plexaura_homomalla Plexaura homomalla]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DY5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DY5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.51&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1u5u|1u5u]], [[2fnq|2fnq]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3dy5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dy5 OCA], [http://pdbe.org/3dy5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dy5 RCSB], [http://www.ebi.ac.uk/pdbsum/3dy5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dy5 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dy5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dy5 OCA], [https://pdbe.org/3dy5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dy5 RCSB], [https://www.ebi.ac.uk/pdbsum/3dy5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dy5 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/AOSL_PLEHO AOSL_PLEHO]] Bifunctional enzyme which is responsible for allene oxide biosynthesis via a two-step reaction which involves conversion of arachidonic acid to a 8R-hydroperoxide intermediate followed by conversion of the hydroperoxide to allene oxide.<ref>PMID:9302294</ref> <ref>PMID:10559269</ref>
+
[https://www.uniprot.org/uniprot/AOSL_PLEHO AOSL_PLEHO] Bifunctional enzyme which is responsible for allene oxide biosynthesis via a two-step reaction which involves conversion of arachidonic acid to a 8R-hydroperoxide intermediate followed by conversion of the hydroperoxide to allene oxide.<ref>PMID:9302294</ref> <ref>PMID:10559269</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 33: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Black sea rod]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Gilbert, N C]]
+
[[Category: Plexaura homomalla]]
-
[[Category: Newcomer, M E]]
+
[[Category: Gilbert NC]]
-
[[Category: Niebuhr, M]]
+
[[Category: Newcomer ME]]
-
[[Category: Tsuruta, H]]
+
[[Category: Niebuhr M]]
-
[[Category: Bi-functional enzyme]]
+
[[Category: Tsuruta H]]
-
[[Category: Dioxygenase]]
+
-
[[Category: Fatty acid biosynthesis]]
+
-
[[Category: Fusion protein]]
+
-
[[Category: Heme]]
+
-
[[Category: Iron]]
+
-
[[Category: Lipid synthesis]]
+
-
[[Category: Lyase]]
+
-
[[Category: Membrane]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Multifunctional enzyme]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Oxylipin biosynthesis]]
+

Current revision

Allene oxide synthase 8R-lipoxygenase from Plexaura homomalla

PDB ID 3dy5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools