6xt6

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'''Unreleased structure'''
 
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The entry 6xt6 is ON HOLD until Paper Publication
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==pro-concanavalin A: Precursor of circularly permuted concanavalin A==
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<StructureSection load='6xt6' size='340' side='right'caption='[[6xt6]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6xt6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Canavalia_ensiformis Canavalia ensiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XT6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6XT6 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.103&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6xt6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xt6 OCA], [https://pdbe.org/6xt6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6xt6 RCSB], [https://www.ebi.ac.uk/pdbsum/6xt6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6xt6 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CONA_CANEN CONA_CANEN] D-mannose specific lectin.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Over 30 years ago, an intriguing post-translational modification was found responsible for creating concanavalin A (conA), a carbohydrate-binding protein from jack bean (Canavalia ensiformis) seeds and a common carbohydrate chromatography reagent. ConA biosynthesis involves what was then an unprecedented rearrangement in amino-acid sequence, whereby the N-terminal half of the gene-encoded conA precursor is swapped to become the C-terminal half of conA. Asparaginyl endopeptidase (AEP) was shown to be involved, but its mechanism was not fully elucidated. To understand the structural basis and consequences of circular permutation, we generated recombinant jack bean conA precursor (pro-conA) plus jack bean AEP (CeAEP1) and solved crystal structures for each to 2.1 A and 2.7 A, respectively. By reconstituting conA biosynthesis in vitro, we prove CeAEP1 alone can perform both cleavage and cleavage-coupled transpeptidation to form conA. CeAEP1 structural analysis reveals how it is capable of carrying out both reactions. Biophysical assays illustrated that pro-conA is less stable than conA. This observation was explained by fewer intermolecular interactions between subunits in the pro-conA crystal structure and consistent with a difference in the prevalence for tetramerisation in solution. These findings elucidate the consequences of circular permutation in the only post-translation example known to occur in nature.
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Authors: Nonis, S.G., Haywood, J., Schmidberger, J.W., Bond, C.S.
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Structural and biochemical analyses of concanavalin A circular permutation by jack bean asparaginyl endopeptidase.,Nonis SG, Haywood J, Schmidberger JW, Mackie ERR, Soares da Costa TP, Bond CS, Mylne JS Plant Cell. 2021 May 8. pii: 6272525. doi: 10.1093/plcell/koab130. PMID:34235541<ref>PMID:34235541</ref>
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Description: pro-concanavalin A: Precursor of circularly permuted concanavalin A
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Nonis, S.G]]
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<div class="pdbe-citations 6xt6" style="background-color:#fffaf0;"></div>
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[[Category: Haywood, J]]
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== References ==
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[[Category: Schmidberger, J.W]]
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<references/>
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[[Category: Bond, C.S]]
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__TOC__
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</StructureSection>
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[[Category: Canavalia ensiformis]]
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[[Category: Large Structures]]
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[[Category: Bond CS]]
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[[Category: Haywood J]]
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[[Category: Nonis SG]]
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[[Category: Schmidberger JW]]

Current revision

pro-concanavalin A: Precursor of circularly permuted concanavalin A

PDB ID 6xt6

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