7ctr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: '''Unreleased structure''' The entry 7ctr is ON HOLD Authors: Emori, M., Numoto, N., Senga, A., Bekker, G.J., Kamiya, N., Ito, N., Kawai, F., Oda, M. Description: Closed form of PET-de...)
Current revision (16:16, 29 November 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 7ctr is ON HOLD
+
==Closed form of PET-degrading cutinase Cut190 with thermostability-improving mutations of S226P/R228S/Q138A/D250C-E296C/Q123H/N202H==
 +
<StructureSection load='7ctr' size='340' side='right'caption='[[7ctr]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[7ctr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomonospora_viridis Saccharomonospora viridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CTR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CTR FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DIO:1,4-DIETHYLENE+DIOXIDE'>DIO</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ctr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ctr OCA], [https://pdbe.org/7ctr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ctr RCSB], [https://www.ebi.ac.uk/pdbsum/7ctr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ctr ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/W0TJ64_9PSEU W0TJ64_9PSEU]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The cutinase-like enzyme from the thermophile Saccharomonospora viridis AHK190, Cut190, is a good candidate to depolymerize polyethylene terephthalate (PET) efficiently. We previously developed a mutant of Cut190 (S226P/R228S), which we designated as Cut190* that has both increased activity and stability and solved its crystal structure. Recently, we showed that mutation of D250C/E296C on one of the Ca(2+) -binding sites resulted in a higher thermal stability while retaining its polyesterase activity. In this study, we solved the crystal structures of Cut190* mutants, Q138A/D250C-E296C/Q123H/N202H, designated as Cut190*SS, and its inactive S176A mutant, Cut190*SS_S176A, at high resolution. The overall structures were similar to those of Cut190* and Cut190*S176A reported previously. As expected, Cys250 and Cys296 were closely located to form a disulfide bond, which would assuredly contribute to increase the stability. Isothermal titration calorimetry experiments and 3D Reference Interaction Site Model calculations showed that the metal-binding properties of the Cut190*SS series were different from those of the Cut190* series. However, our results show that binding of Ca(2+) to the weak binding site, site 1, would be retained, enabling Cut190*SS to keep its ability to use Ca(2+) to accelerate the conformational change from the closed (inactive) to the open (active) form. While increasing the thermal stability, Cut190*SS could still express its enzymatic function. Even after incubation at 70 degrees C, which corresponds to the glass transition temperature of PET, the enzyme retained its activity well, implying a high applicability for industrial PET depolymerization using Cut190*SS.
-
Authors: Emori, M., Numoto, N., Senga, A., Bekker, G.J., Kamiya, N., Ito, N., Kawai, F., Oda, M.
+
Structural basis of mutants of PET-degrading enzyme from Saccharomonospora viridis AHK190 with high activity and thermal stability.,Emori M, Numoto N, Senga A, Bekker GJ, Kamiya N, Kobayashi Y, Ito N, Kawai F, Oda M Proteins. 2020 Dec 19. doi: 10.1002/prot.26034. PMID:33340163<ref>PMID:33340163</ref>
-
Description: Closed form of PET-degrading cutinase Cut190 with thermostability-improving mutations of S226P/R228S/Q138A/D250C-E296C/Q123H/N202H
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Senga, A]]
+
<div class="pdbe-citations 7ctr" style="background-color:#fffaf0;"></div>
-
[[Category: Kamiya, N]]
+
 
-
[[Category: Numoto, N]]
+
==See Also==
-
[[Category: Bekker, G.J]]
+
*[[Cutinase 3D structures|Cutinase 3D structures]]
-
[[Category: Ito, N]]
+
== References ==
-
[[Category: Emori, M]]
+
<references/>
-
[[Category: Kawai, F]]
+
__TOC__
-
[[Category: Oda, M]]
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Saccharomonospora viridis]]
 +
[[Category: Bekker GJ]]
 +
[[Category: Emori M]]
 +
[[Category: Ito N]]
 +
[[Category: Kamiya N]]
 +
[[Category: Kawai F]]
 +
[[Category: Numoto N]]
 +
[[Category: Oda M]]
 +
[[Category: Senga A]]

Current revision

Closed form of PET-degrading cutinase Cut190 with thermostability-improving mutations of S226P/R228S/Q138A/D250C-E296C/Q123H/N202H

PDB ID 7ctr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools