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TestHbonds

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Current revision (12:45, 13 September 2020) (edit) (undo)
 
(17 intermediate revisions not shown.)
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<StructureSection load='' size='450' side='right' scene='85/859650/Cv/2' caption=''>
<StructureSection load='' size='450' side='right' scene='85/859650/Cv/2' caption=''>
*<scene name='86/861331/Cv/1'>old</scene>
*<scene name='86/861331/Cv/1'>old</scene>
-
*<scene name='86/861331/Cv/2'>preliminary</scene>
+
*<scene name='86/861331/Cv/4'>New scene created by this script</scene>.
-
*<scene name='86/861331/Cv/3'>Q1</scene>
+
 
 +
nc = {[NAD]}.chainNo.min;
 +
define ligOne [NAD] and chainNo=nc;
 +
nc = {ligOne}.resNo.min;
 +
define ligOne ligOne and resNo=nc;
 +
 
 +
define ligContact within(3.5, ligOne) and protein;
 +
define ligContact within(group,ligContact);
 +
select ligContact and (hydrogens); hide selected;
 +
select ligContact and sidechain; color cpk;
 +
select ligContact and (sidechain,alpha); wireframe 0.3;
 +
select ligContact and *.CB; label %m%r;
 +
background label yellow; color labels black;
 +
zoomTo 0.5 { (ligOne , ligContact )} 0 *0.8;
 +
select all;
 +
 
 +
*Script used for <scene name='86/861331/Cv/2'>initial scene</scene>.
 +
*<scene name='86/861331/Cv/6'>New scene1</scene>
 +
 
 +
nc = {[NAD]}.chainNo.min;
 +
define ligOne [NAD] and chainNo=nc;
 +
nc = {ligOne}.resNo.min;
 +
define ligOne ligOne and resNo=nc;
 +
 
 +
define ligContact within(3.5, ligOne) and protein;
 +
define ligContact within(group,ligContact);
 +
select ligContact and (hydrogens); hide selected;
 +
select ligContact and sidechain; color cpk;
 +
select ligContact and (sidechain,alpha); wireframe 0.3;
 +
select ligContact and *.CB; label %m%r;
 +
background label yellow; color labels black;
 +
zoomTo 0.5 { (ligOne , ligContact )} 0 *1.5;
 +
 
 +
*Script used for <scene name='86/861331/Cv/2'>initial scene</scene>.
 +
*<scene name='86/861331/Cv/12'>New scene2</scene>
 +
 
 +
nc = {[NAD]}.chainNo.min;
 +
define ligOne [NAD] and chainNo=nc;
 +
nc = {ligOne}.resNo.min;
 +
define ligOne ligOne and resNo=nc;
 +
 
 +
define ligContact within(3.5, ligOne) and protein;
 +
select ligOne and (hydrogens); hide selected;
 +
define ligContact within(group,ligContact);
 +
select ligContact and (hydrogens); hide selected;
 +
select ligContact and sidechain; color cpk;
 +
select ligContact and (sidechain,alpha); wireframe 0.2;
 +
select ligContact and *.CB; label %m%r;
 +
background label yellow; color labels black;
 +
select ligContact and (carbons) and (sidechain); color magenta;
 +
zoomTo 0.5 { (ligOne , ligContact )} 0 *1.5;
 +
 
 +
*Script used for <scene name='86/861331/Cv/2'>initial scene</scene>.
 +
*<scene name='86/861331/Cv/13'>New scene3</scene>
 +
 
</StructureSection>
</StructureSection>
== References ==
== References ==
<references/>
<references/>

Current revision

Drag the structure with the mouse to rotate

References

Proteopedia Page Contributors and Editors (what is this?)

Alexander Berchansky

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