User:Karsten Theis/BioMolViz

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(→Visualization framework ([https://biomolviz.org/ BIOMOLVIZ]))
Current revision (18:01, 1 April 2025) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 7: Line 7:
<scene name='85/857774/Ag/1'>AG</scene>: <scene name='85/857774/Glucose/1'>Glucose</scene>
<scene name='85/857774/Ag/1'>AG</scene>: <scene name='85/857774/Glucose/1'>Glucose</scene>
-
<scene name='85/857774/Ar/4'>AR</scene> (<jmol>
+
<scene name='85/857774/Ar/5'>AR</scene> (<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenUnChecked>animation off; delay 1; model 2
+
<scriptWhenUnChecked>animation off;
</scriptWhenUnChecked>
</scriptWhenUnChecked>
-
<scriptWhenchecked>animation mode loop 0.0 0.0; animation FPS 2; animation on
+
<scriptWhenchecked>animation mode loop 0.0 0.0; animation FPS 1; animation on
</scriptWhenchecked>
</scriptWhenchecked>
<checked>true</checked>
<checked>true</checked>
Line 17: Line 17:
</jmolCheckbox>
</jmolCheckbox>
</jmol>): <scene name='85/857774/Overall/2'>Lysozyme</scene> (and <scene name='85/857774/Overall/3'>alternate view</scene>)
</jmol>): <scene name='85/857774/Overall/2'>Lysozyme</scene> (and <scene name='85/857774/Overall/3'>alternate view</scene>)
- 
- 
<scene name='85/857774/Ca/1'>CA</scene> (<jmol>
<scene name='85/857774/Ca/1'>CA</scene> (<jmol>
Line 32: Line 30:
<scene name='85/857774/Ma/1'>MA</scene>: <scene name='85/857774/Lipid_bilayer/2'>lipid bilayer</scene>, <scene name='85/857774/Virus_capsid/1'>virus capsid
<scene name='85/857774/Ma/1'>MA</scene>: <scene name='85/857774/Lipid_bilayer/2'>lipid bilayer</scene>, <scene name='85/857774/Virus_capsid/1'>virus capsid
</scene>
</scene>
 +
 +
<scene name='85/857774/Mb/1'>MB</scene>: <scene name='85/857774/Succinylcoa/1'>SuccinylCoA</scene>, <scene name='85/857774/Nad/1'>NAD
 +
</scene>
 +
<scene name='85/857774/Md/1'>MD</scene> (<jmol>
<scene name='85/857774/Md/1'>MD</scene> (<jmol>
<jmolCheckbox>
<jmolCheckbox>
Line 43: Line 45:
</jmol>): <scene name='User:Wayne_Decatur/1cts_to_2cts_(citrate_synthase)_morph_methods/Camorph/5'>citrate synthase</scene>
</jmol>): <scene name='User:Wayne_Decatur/1cts_to_2cts_(citrate_synthase)_morph_methods/Camorph/5'>citrate synthase</scene>
-
<scene name='85/857774/Molecularinteraction/1'>MI</scene>: <scene name='85/857774/Molecularinteraction/1'>major groove interaction</scene>, <scene name='85/857774/Dna/1'>base stacking</scene>, <scene name='85/857774/Dna/2'>G-protein</scene>
+
<scene name='85/857774/Molecularinteraction/1'>MI</scene>: <scene name='85/857774/Molecularinteraction/1'>major groove interaction</scene>, <scene name='85/857774/Dna/1'>base stacking</scene>, <scene name='85/857774/Dna/2'>G-protein</scene> [[User:Karsten Theis/Molecular Interactions|Theme page]]
-
 
+
-
<scene name='85/857774/Mb/1'>MB</scene>: <scene name='85/857774/Succinylcoa/1'>SuccinylCoA</scene>, <scene name='85/857774/Nad/1'>NAD
+
-
</scene>
+
<scene name='85/857774/Sa/1'>SA</scene> (<jmol>
<scene name='85/857774/Sa/1'>SA</scene> (<jmol>
Line 61: Line 60:
</jmol>, <scene name='85/857774/Ankyrin/1'>ankyrin repeats</scene>
</jmol>, <scene name='85/857774/Ankyrin/1'>ankyrin repeats</scene>
-
SF: <scene name='85/857774/Chymotrypsin/3'>active site of chymotrypsin
+
SF: <scene name='85/857774/Chymotrypsin/4'>active site of chymotrypsin
</scene>
</scene>

Current revision

Visualization framework (BIOMOLVIZ)

One of the 12 overarching themes is MI, molecular interactions, illustrated here by the lambda repressor bound to the major grooves of double-stranded DNA

Drag the structure with the mouse to rotate

Resources for teaching

by Eric Martz:

Proteopedia Page Contributors and Editors (what is this?)

Karsten Theis

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