User:Karsten Theis/Molecular Interactions
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| - | [[User:Karsten Theis/Molecular Interactions|Molecular Interactions]] is one of the 12 themes of the BioMolViz framework. The theme is about covalent and noncovalent bonding governing ligand binding and subunit‐subunit interactions. Within the theme, there are two groups of competencies. This page provides exemplary 3D scenes with questions that invoke these competencies. | + | [[User:Karsten Theis/Molecular Interactions|Molecular Interactions]] is one of the 12 themes of the [https://biomolviz.org/framework/ BioMolViz framework]. The theme is about covalent and noncovalent bonding governing ligand binding and subunit‐subunit interactions. Within the theme, there are two groups of competencies. This page provides exemplary 3D scenes with questions that invoke these competencies. |
| - | Space for more text explaining the [https://biomolviz.org/framework/ framework]. Scroll down for the 3D scenes. | ||
| - | <br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br> | ||
==Competencies== | ==Competencies== | ||
<StructureSection load='' size='340' side='right' caption='MI: covalent and noncovalent bonding governing ligand binding and subunit‐subunit interactions' scene='85/857774/Molecularinteraction/1'> | <StructureSection load='' size='340' side='right' caption='MI: covalent and noncovalent bonding governing ligand binding and subunit‐subunit interactions' scene='85/857774/Molecularinteraction/1'> | ||
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</jmolCheckbox> | </jmolCheckbox> | ||
</jmol> | </jmol> | ||
| - | # <scene name='86/864086/Atp/3'> | + | # Predicting <scene name='86/864086/Atp/3'>hydrogen bond</scene> donors or acceptors. |
| - | # Explaining the electronic origin of the different non‐covalent interactions using appropriate 3D renderings. | + | # Explaining the <scene name='86/864093/Water/1'>electronic origin</scene> of the different non‐covalent interactions using <jmol> |
| - | # Ranking the relative strengths of covalent and non-covalent interactions in a given 3D rendering. | + | <jmolCheckbox> |
| + | <scriptWhenUnChecked>isosurface off</scriptWhenUnChecked> | ||
| + | <scriptWhenchecked>select all; isosurface molecular map mep color translucent</scriptWhenchecked> | ||
| + | <checked>false</checked> | ||
| + | <text>appropriate 3D renderings</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>. | ||
| + | # Ranking the relative strengths of <scene name='78/786673/Gal_active_site/6'>covalent and non-covalent interactions</scene> in a given 3D rendering. | ||
====2. Evaluating the effect of the local environment on molecular interactions.==== | ====2. Evaluating the effect of the local environment on molecular interactions.==== | ||
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== References == | == References == | ||
<references/> | <references/> | ||
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| + | [[Category: BioMolViz]] | ||
| + | [[Category: Molecular Interactions]] | ||
Current revision
Molecular Interactions is one of the 12 themes of the BioMolViz framework. The theme is about covalent and noncovalent bonding governing ligand binding and subunit‐subunit interactions. Within the theme, there are two groups of competencies. This page provides exemplary 3D scenes with questions that invoke these competencies.
Competencies
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