This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Porin 3D structures
From Proteopedia
(Difference between revisions)
| (2 intermediate revisions not shown.) | |||
| Line 20: | Line 20: | ||
**[[3vzt]] – NmOmpB – ''Neisseria meningitides''<br /> | **[[3vzt]] – NmOmpB – ''Neisseria meningitides''<br /> | ||
| + | **[[7de8]] – NmOmpB (mutant) <br /> | ||
**[[3a2s]], [[3vzw]] – NmOmpB+sugars<br /> | **[[3a2s]], [[3vzw]] – NmOmpB+sugars<br /> | ||
**[[3vzu]] - NmOmpB+AMPPNP<br /> | **[[3vzu]] - NmOmpB+AMPPNP<br /> | ||
| Line 27: | Line 28: | ||
**[[2xe5]], [[2xe1]], [[2xe2]], [[2xe3]], [[2j1n]], [[2xg6]] – EcOmpC <br /> | **[[2xe5]], [[2xe1]], [[2xe2]], [[2xe3]], [[2j1n]], [[2xg6]] – EcOmpC <br /> | ||
| + | **[[7jz3]] - EcOmpC – Cryo EM<br /> | ||
**[[2zle]] - EcOmpC + protease DO – EM<br /> | **[[2zle]] - EcOmpC + protease DO – EM<br /> | ||
**[[4a8d]] - EcOmpC + DEGP – EM<br /> | **[[4a8d]] - EcOmpC + DEGP – EM<br /> | ||
| Line 35: | Line 37: | ||
*OmpF | *OmpF | ||
| - | **[[3k19]], [[3k1b]], [[2zfg]], [[2omf]], [[1opf]], [[3poq]], [[3pou]], [[3pox]], [[4jfb]], [[4lse]], [[4lsf]], [[4lsh]], [[4lsi]], [[4d5u]] – EcOmpF<br /> | + | **[[3k19]], [[3k1b]], [[2zfg]], [[2omf]], [[1opf]], [[3poq]], [[3pou]], [[3pox]], [[4jfb]], [[4lse]], [[4lsf]], [[4lsh]], [[4lsi]], [[4d5u]], [[7fdy]], [[8c7l]] – EcOmpF<br /> |
| + | **[[6wtz]] – EcOmpF – Cryo EM<br /> | ||
**[[1hxt]], [[1hxu]], [[1hxx]], [[1bt9]], [[1gfm]], [[1gfn]], [[1gfo]], [[1gfp]], [[1gfq]], [[1mpf]] – EcOmpF (mutant) <br /> | **[[1hxt]], [[1hxu]], [[1hxx]], [[1bt9]], [[1gfm]], [[1gfn]], [[1gfo]], [[1gfp]], [[1gfq]], [[1mpf]] – EcOmpF (mutant) <br /> | ||
**[[5nur]], [[5nuo]] – EcOmpF + ABC transprter permease<br /> | **[[5nur]], [[5nuo]] – EcOmpF + ABC transprter permease<br /> | ||
**[[5nuq]] – EcOmpF + MLAA<br /> | **[[5nuq]] – EcOmpF + MLAA<br /> | ||
**[[2zld]] – EcOmpF+colicin E3<br /> | **[[2zld]] – EcOmpF+colicin E3<br /> | ||
| + | **[[7nst]] – EcOmpF+colicin E9 + TolB – Cryo EM<br /> | ||
| + | **[[7nsu]] – EcOmpF+colicin E9 + TolB + BtuB – Cryo EM<br /> | ||
**[[3o0e]] - EcOmpF+colicin peptide<br /> | **[[3o0e]] - EcOmpF+colicin peptide<br /> | ||
**[[3hw9]], [[3hwb]] – EcOmpF+ions<br /> | **[[3hw9]], [[3hwb]] – EcOmpF+ions<br /> | ||
**[[3fyx]] – EcOmpF+dibenzo-18-crown-6<br /> | **[[3fyx]] – EcOmpF+dibenzo-18-crown-6<br /> | ||
| - | **[[4gcp]], [[4gcq]], [[4gcs]] – EcOmpF + antibiotic<br /> | + | **[[4gcp]], [[4gcq]], [[4gcs]], [[6zhp]], [[6zhv]] – EcOmpF + antibiotic<br /> |
**[[3nsg]] – StOmpF - ''Salmonella typhimurium''<br /> | **[[3nsg]] – StOmpF - ''Salmonella typhimurium''<br /> | ||
**[[4kr4]], [[4kr8]], [[4kra]] – StOmpF + antibiotics<br /> | **[[4kr4]], [[4kr8]], [[4kra]] – StOmpF + antibiotics<br /> | ||
| Line 50: | Line 55: | ||
*OmpG | *OmpG | ||
| - | **[[2iwv]], [[2iww]], [[2f1c]], [[4ctd]] – EcOmpG<br /> | + | **[[2iwv]], [[2iww]], [[2f1c]], [[4ctd]], [[7q5c]] – EcOmpG<br /> |
**[[2x9k]], [[2wvp]] - EcOmpG (mutant) <br /> | **[[2x9k]], [[2wvp]] - EcOmpG (mutant) <br /> | ||
| - | **[[2jqy]] – EcOmpG - NMR<br /> | + | **[[2jqy]], [[6oqh]] – EcOmpG - NMR<br /> |
*OmpK | *OmpK | ||
| - | **[[1osm]], [[6rck]] – KpOmpK36 <br /> | + | **[[1osm]], [[6rck]], [[6rcp]], [[6rd3]] – KpOmpK36 <br /> |
**[[6rcp]] – KpOmpK36 (mutant)<br /> | **[[6rcp]] – KpOmpK36 (mutant)<br /> | ||
**[[5nup]] – KpOmpK36 + ABC transporter permease<br /> | **[[5nup]] – KpOmpK36 + ABC transporter permease<br /> | ||
| - | **[[ | + | **[[6v78]] – KpOmpK37 <br /> |
*OmpM | *OmpM | ||
| Line 69: | Line 74: | ||
**[[1opc]] - EcOmpR C terminal<br /> | **[[1opc]] - EcOmpR C terminal<br /> | ||
| + | |||
| + | *OmpT | ||
| + | |||
| + | **[[5oyk]], [[6ehd]], [[6ehf]] - VcOmpT – ''Vibrio cholerae''<br /> | ||
*OmpU | *OmpU | ||
| - | **[[6ehb]], [[5onu]] - VcOmpU | + | **[[6ehb]], [[5onu]] - VcOmpU <br /> |
**[[6ehc]] - VcOmpU (mutant)<br /> | **[[6ehc]] - VcOmpU (mutant)<br /> | ||
| Line 80: | Line 89: | ||
**[[2fgq]] – DaOmp32+malate<br /> | **[[2fgq]] – DaOmp32+malate<br /> | ||
**[[1e54]] – Omp32+sulfate – ''Comamonas acidovorans''<br /> | **[[1e54]] – Omp32+sulfate – ''Comamonas acidovorans''<br /> | ||
| + | |||
| + | *Omp33 | ||
| + | |||
| + | **[[6gie]] – AbOmp33 – ''Acinetobacter baumannii''<br /> | ||
*Omp35 | *Omp35 | ||
| Line 143: | Line 156: | ||
**[[3t20]] – PaOprH<br /> | **[[3t20]] – PaOprH<br /> | ||
| + | |||
| + | *OpdL | ||
| + | |||
| + | **[[2y0h]] – PaOpdL<br /> | ||
*OpdO (pyroglutatmate porin) | *OpdO (pyroglutatmate porin) | ||
| Line 170: | Line 187: | ||
**[[5nxu]] – PsOmp 1 + maltose<br /> | **[[5nxu]] – PsOmp 1 + maltose<br /> | ||
**[[4d65]] – PsOmp 2<br /> | **[[4d65]] – PsOmp 2<br /> | ||
| - | **[[4fuv]], [[5dl7]] – | + | **[[4fuv]], [[5dl7]] – AbOmp<br /> |
*Sugar-specific porin | *Sugar-specific porin | ||
| Line 180: | Line 197: | ||
**[[1mal]] – EcLamB<br /> | **[[1mal]] – EcLamB<br /> | ||
| + | **[[8b7v]] – EcLamB – Cryo EM<br /> | ||
**[[1af6]], [[1mpq]], [[1mpm]], [[1mpn]], [[1mpo]] – EcLamB+sugars<br /> | **[[1af6]], [[1mpq]], [[1mpm]], [[1mpn]], [[1mpo]] – EcLamB+sugars<br /> | ||
**[[2mpr]], [[1mpr]] – StLamB<br /> | **[[2mpr]], [[1mpr]] – StLamB<br /> | ||
| + | |||
| + | *Chitoporin | ||
| + | |||
| + | **[[7vu2]], [[7vu3]] – SmChitp + chitohexaose – ''Serratia marcescens''<br /> | ||
| + | **[[7vtz]], [[7vu0]], [[7vu1]] – EcChitp + chitohexaose <br /> | ||
| + | **[[5ndp]], [[5mdq]], [[5mds]] – VhChitp – ''Vibrio harveyi'' <br /> | ||
| + | **[[5mdo]], [[5mdr]], [[7eqm]], [[7eqr]] – VhChitp + chitohexaose <br /> | ||
| + | **[[7x5q]] – VhChitp + chitohexaose + peptide<br /> | ||
| + | **[[7x5p]] – VhChitp + chitohexaose + doxycycline<br /> | ||
Voltage-Dependent Anion Channel | Voltage-Dependent Anion Channel | ||
Current revision
3D structures of Porin
Updated on 05-September-2023
Voltage-Dependent Anion Channel
See Ion channels
