|
|
(One intermediate revision not shown.) |
Line 3: |
Line 3: |
| <StructureSection load='3nep' size='340' side='right'caption='[[3nep]], [[Resolution|resolution]] 1.55Å' scene=''> | | <StructureSection load='3nep' size='340' side='right'caption='[[3nep]], [[Resolution|resolution]] 1.55Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3nep]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salinibacter_ruber Salinibacter ruber]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NEP OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3NEP FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3nep]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salinibacter_ruber_DSM_13855 Salinibacter ruber DSM 13855]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NEP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NEP FirstGlance]. <br> |
- | </td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase Malate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.37 1.1.1.37] </span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.551Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3nep FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nep OCA], [http://pdbe.org/3nep PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3nep RCSB], [http://www.ebi.ac.uk/pdbsum/3nep PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3nep ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nep FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nep OCA], [https://pdbe.org/3nep PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nep RCSB], [https://www.ebi.ac.uk/pdbsum/3nep PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nep ProSAT]</span></td></tr> |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/MDH_SALRD MDH_SALRD]] Catalyzes the reversible oxidation of malate to oxaloacetate.[HAMAP-Rule:MF_00487] | + | [https://www.uniprot.org/uniprot/MDH_SALRD MDH_SALRD] Catalyzes the reversible oxidation of malate to oxaloacetate.[HAMAP-Rule:MF_00487] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 26: |
Line 26: |
| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Malate dehydrogenase]]
| + | [[Category: Salinibacter ruber DSM 13855]] |
- | [[Category: Salinibacter ruber]] | + | [[Category: Coquelle N]] |
- | [[Category: Coquelle, N]] | + | [[Category: Madern D]] |
- | [[Category: Madern, D]] | + | |
- | [[Category: Halophile]]
| + | |
- | [[Category: Molecular adpatation]]
| + | |
- | [[Category: Nad]]
| + | |
- | [[Category: Oxidoreductase]]
| + | |
- | [[Category: Tricarboxylic acid cycle]]
| + | |
| Structural highlights
Function
MDH_SALRD Catalyzes the reversible oxidation of malate to oxaloacetate.[HAMAP-Rule:MF_00487]
Publication Abstract from PubMed
Several experimental techniques were applied to unravel fine molecular details of protein adaptation to high salinity. We compared four homologous enzymes, which suggested a new halo-adaptive state in the process of molecular adaptation to high-salt conditions. Together with comparative functional studies, the structure of malate dehydrogenase from the eubacterium Salinibacter ruber shows that the enzyme shares characteristics of a halo-adapted archaea-bacterial enzyme and of non-halo-adapted enzymes from other eubacterial species. The S. ruber enzyme is active at the high physiological concentrations of KCl but, unlike typical halo-adapted enzymes, remains folded and active at low salt concentrations. Structural aspects of the protein, including acidic residues at the surface, solvent-exposed hydrophobic surface, and buried hydrophobic surface, place it between the typical halo-adapted and non-halo-adapted proteins. The enzyme lacks inter-subunit ion-binding sites often seen in halo-adapted enzymes. These observations permit us to suggest an evolutionary pathway that is highlighted by subtle trade-offs to achieve an optimal compromise among solubility, stability, and catalytic activity.
Gradual Adaptive Changes of a Protein Facing High Salt Concentrations.,Coquelle N, Talon R, Juers DH, Girard E, Kahn R, Madern D J Mol Biol. 2010 Oct 1. PMID:20888835[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Coquelle N, Talon R, Juers DH, Girard E, Kahn R, Madern D. Gradual Adaptive Changes of a Protein Facing High Salt Concentrations. J Mol Biol. 2010 Oct 1. PMID:20888835 doi:10.1016/j.jmb.2010.09.055
|