Sandbox Reserved 1637
From Proteopedia
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| - | {{Sandbox_Reserved_BHall_F20}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE --> | + | <Structure load=1637'Insert PDB code or filename here' size='350' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />{{Sandbox_Reserved_BHall_F20}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE --> |
==Your Heading Here (maybe something like 'Structure')== | ==Your Heading Here (maybe something like 'Structure')== | ||
| - | <StructureSection load=' | + | <StructureSection load='1637' size='340' side='right' caption='Caption for this structure' scene=''> |
This is a default text for your page ''''''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | This is a default text for your page ''''''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | ||
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | ||
== Function of your Protein == | == Function of your Protein == | ||
| + | 1637<scene name='86/861619/Protein/1'>Text To Be Displayed</scene> | ||
| + | -organism from protein: Side A | ||
| + | -activity of flavin: Iron is the important element in nutrient for growth and preproduction. It has two function first is garbing metal and second enzymatic activity. | ||
| + | c) My protein is siderophore which means has sort of enzymes and sort of receptors for garbing iron. Also take L-ornithine and converted to L-N^5hydroxyyornithine. | ||
| + | . | ||
== Biological relevance and broader implications == | == Biological relevance and broader implications == | ||
| + | a) The siderophore biosynthetic enzyme A(side A) is essential for virulence in Aspergillus fumigatus. Aspergillus is organism in fungus can cause disease in humans and animals. Lack of the (side A )gene in A. fumigatus renders the fungus unable to cease disease in mouse models. | ||
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| + | b) The Aspergillus fumigatus is organism in fungus which infects the lungs and cause fatal mycoses in humans and other animals. | ||
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| + | c) It is relevant to part of microbiology because it is talking about pathogens and how they can affect humans and animals, and how we can treat them. It needs to study this topic because in each year 200,000 new cases of invasive aspergillosis in humans result showing around half of that number dead. | ||
== Important amino acids == | == Important amino acids == | ||
| + | a) My protein is a ligand free | ||
| + | amino acids: red color<scene name='86/861619/Amino_acid/1'>Text To Be Displayed</scene> | ||
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== Structural highlights == | == Structural highlights == | ||
| - | + | secondary structure: Secondary structure refers to regular, recurring arrangements in space of adjacent amino acid residues in a polypeptide chain. It is maintained by hydrogen bonds between amide hydrogens and carbonyl oxygens of the peptide backbone. has two major function alpha helices and beta sheet | |
| + | alpha helices figure<scene name='86/861619/Secondary_alpha/1'>Text To Be Displayed</scene> | ||
| + | |||
| + | <scene name='86/861619/Secondary_beta/1'>Text To Be Displayed</scene> | ||
| + | Beta sheet figure | ||
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| + | territory structure: is the overall the three-dimension folding driven largely by interactions between R groups. | ||
| + | 3D figure<scene name='86/861619/Tertiary_structure/1'>Text To Be Displayed</scene> | ||
| + | |||
| + | space filling: It has three colors: | ||
| + | red : carbon, light purple: side A, light green : backbone trace, <scene name='86/861619/Space_fill/1'>Text To Be Displayed</scene> | ||
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| + | == Other important features == | ||
| + | hydrophilic: <scene name='86/861619/Protein/2'>Text To Be Displayed</scene> | ||
| + | Acidic pka 6.0 | ||
| + | <scene name='86/861619/Protein/3'>Text To Be Displayed</scene> | ||
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | ||
</StructureSection> | </StructureSection> | ||
== References == | == References == | ||
| - | < | + | <ref>32723870</ref> |
Current revision
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| This Sandbox is Reserved from 09/18/2020 through 03/20/2021 for use in CHEM 351 Biochemistry taught by Bonnie Hall at Grand View University, Des Moines, IA. This reservation includes Sandbox Reserved 1628 through Sandbox Reserved 1642. |
To get started:
More help: Help:Editing |
Your Heading Here (maybe something like 'Structure')
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